Patents Examined by Robert B. Mondesi
  • Patent number: 12098405
    Abstract: The present disclosure relates to the biosynthesis of indigoid dye precursors and their conversion to indigoid dyes. Specifically, the present disclosure relates to methods of using polypeptides to produce indigoid dye precursors from indole feed compounds, and the use of the indigoid dye precursors to produce indigoid dyes.
    Type: Grant
    Filed: November 9, 2021
    Date of Patent: September 24, 2024
    Assignee: The Regents of the University of California
    Inventors: John Eugene Dueber, Zachary Nicholas Russ, Tammy Melody Hsu, Terry Don Johnson, Jr., Bernardo Cervantes, Ramya Lakshmi Prathuri, Shyam Pravin Bhakta, Arthur Muir Fong, III, Luke Nathaniel Latimer
  • Patent number: 12077747
    Abstract: The invention provides recombinant algal organisms that have a genetic modification to a gene or nucleic acid sequence encoding an RNA binding domain. In some embodiments the genetic modification can be a functional deletion or attenuation of the gene. The genetic modification results in a mutant organism with increased lipid productivity and/or higher biomass productivity. The lipid products of these mutants can be utilized as biofuels or to manufacture other specialty products. The recombinant mutants can also, optionally, have a genetic modification to a gene encoding an SGI1 polypeptide. Methods of making and using the recombinant algal mutants and methods of producing lipids are also disclosed.
    Type: Grant
    Filed: September 9, 2021
    Date of Patent: September 3, 2024
    Assignee: Viridos, Inc.
    Inventors: Saheed Imam, Eric R. Moellering, Luke Peach, William F. Lambert, Jessica Weir
  • Patent number: 12077793
    Abstract: Embodiments of the disclosure provide for unique lipooligosaccharide/lipid A-based mimetics for use as adjuvants. Methods of generating lipooligosaccharide/lipid A-based mimetics are provided that utilize recombinantly engineered bacteria to produce the mimetics, including, for example, addition of one or more particular enzymes such as acyltransferases, deacylases, phosphatases, or glycosyltransferases.
    Type: Grant
    Filed: August 23, 2021
    Date of Patent: September 3, 2024
    Assignees: University of Maryland, Baltimore, University of Washington
    Inventors: Robert K. Ernst, Mark Pelletier, Adeline Hajjar
  • Patent number: 12077762
    Abstract: The instant disclosure is generally related to novel engineered (hybrid) promoters. In certain embodiments, the instant disclosure is directed to one or more nucleic acid compositions comprising engineered promoters operably linked to nucleic acids encoding proteins of interest. Thus, the disclosure set forth herein described methods and compositions for the production of proteins of interest using one or more novel engineered (hybrid) promoters of the disclosure.
    Type: Grant
    Filed: August 8, 2022
    Date of Patent: September 3, 2024
    Assignee: DANISCO US INC.
    Inventors: Cristina Bongiorni, Marc Anton Bernhard Kolkman, Chris Leeflang, Virgil Arthur Rhodius, Anita Van Kimmenade
  • Patent number: 12071636
    Abstract: The present invention provides novel attenuated Pasteurella multocida strains that may be used, in live or killed form, to formulate vaccines that are highly protective against P. multocida infection in bovines, other mammals, and in birds. The present invention also identifies the combination of nanP and hyaC gene mutations as key to the provision of such vaccines. When appropriately formulated, antigenic material of numerous other bovine pathogens may be combined with the live attenuated Pasteurella multocida strains, to make effective combination vaccines.
    Type: Grant
    Filed: September 17, 2021
    Date of Patent: August 27, 2024
    Assignee: The United States of America, as Represented by the Secretary of Agriculture
    Inventors: Robert E Briggs, Fred M Tatum
  • Patent number: 12060592
    Abstract: Methods for the improved acylation of chemical substrates using LovD acyltransferases, thioesters having acyl groups, and (i) thiol scavengers and/or (ii) precipitating agents are presented. An improved method for the production of simvastatin using (i) activated charcoal as a thiol scavenger and/or (ii) ammonium hydroxide as a precipitating agent is also presented.
    Type: Grant
    Filed: November 4, 2020
    Date of Patent: August 13, 2024
    Assignee: Codexis, Inc.
    Inventors: Steven J. Collier, Ee Ling Teo, Joly Sukumaran, Robert J. Wilson, Junye Xu
  • Patent number: 12037613
    Abstract: The present invention relates to phytase variants. The present invention also relates to polynucleotides encoding the variants; nucleic acid constructs, vectors, and host cells comprising the polynucleotides; and methods of using the variants.
    Type: Grant
    Filed: August 13, 2021
    Date of Patent: July 16, 2024
    Assignee: Novozymes A/S
    Inventors: Hengxiao Zhai, Jesper Vind, Lars Kobberoe Skov, Qian Zhang, Ester Santigosa, Jose-Otavio B. Sorbara, Aurelia Anne Catherine Charlotte Seon, Carrie Louise Walk
  • Patent number: 12024710
    Abstract: A recombinant microorganism of the genus Escherichia, comprises a genetic modification that increases expression of a nosZ gene encoding NosZ, which is a nitrous oxide reductase, in the recombinant microorganism, wherein the recombinant microorganism comprises a nosR gene encoding NosR, a nosD gene encoding NosD, a nosF gene encoding NosF, a nosY gene encoding NosY, and an apbE gene encoding ApbE, and wherein the nosR gene, the nosD gene, the nosF gene, the nosY gene and the apbE gene are derived from a microorganism of the genus Pseudomonas, the genus Paracoccus, or a combination thereof.
    Type: Grant
    Filed: May 26, 2021
    Date of Patent: July 2, 2024
    Assignee: SAMSUNG ELECTRONICS CO., LTD.
    Inventors: Woo Yong Shim, Seung Hoon Song, Jae-Young Kim, Dongsik Yang, Yu Kyung Jung
  • Patent number: 12024731
    Abstract: The present disclosure provides methods for preparing ?-substituted tryptophan compounds. The methods include: combining i) an unsubstituted indole or a substituted indole, ii) a ?-substituted serine, and iii) a tryptophan synthase ?-subunit (i.e., a TrpB); and maintaining the resulting mixture under conditions sufficient to form the ?-substituted tryptophan. The TrpB contains at least one amino acid mutation which promotes formation of an amino-acrylate intermediate. New TrpB variants and new ?-substituted tryptophan analogs are also described.
    Type: Grant
    Filed: December 20, 2021
    Date of Patent: July 2, 2024
    Assignee: California Institute of Technology
    Inventors: Christina E. Boville, Sabine Brinkmann-Chen, Andrew R. Buller, David K. Romney, Christopher K. Prier, Philipp Koch, Remkes A. Scheele
  • Patent number: 12018326
    Abstract: The invention relates to mutant forms of CsgG. The invention also relates to analyte detection and characterization using CsgG.
    Type: Grant
    Filed: October 26, 2021
    Date of Patent: June 25, 2024
    Assignee: Oxford Nanopore Technologies PLC
    Inventors: Lakmal Jayasinghe, Elizabeth Jayne Wallace
  • Patent number: 11987821
    Abstract: Disclosed herein are compositions and methods of treating disclosure provides for compounds for use in treating Mitochondrial Neurogastrointestinal Encephalopathy Syndrome (MNGIE). In some embodiments, the compounds have cell penetrating activity and thymidine phosphorylase activity. In certain embodiments, the compounds disclosed herein comprise: a) at least one cell-penetrating peptide (CPP) moiety; and b) a thymidine phosphorylase, or an active fragment or analog thereof (TP), wherein the CPP is coupled, directly or indirectly, to TP.
    Type: Grant
    Filed: October 6, 2021
    Date of Patent: May 21, 2024
    Assignee: Entrada Therapeutics, Inc.
    Inventors: Natarajan Sethuraman, Jason Ruth, Louis A. Tartaglia, Dehua Pei, Ziqing Qian
  • Patent number: 11987774
    Abstract: Processes and systems for recovering products from a corn fermentation mash. In one example, a process for recovering products from a corn fermentation mash can include separating ethanol from a fermentation mash to produce a whole stillage. The fermentation mash can be derived from a ground corn product milled from a plurality of corn pieces. The plurality of corn pieces can include whole corn kernels, fragmented corn kernels, size-reduced corn kernels, milled corn kernels, or a mixture thereof. Greater than 25 wt % of the ground corn product can have a particle size of greater than 105 ?m and greater than 80 wt % of the ground corn product can have a particle size of 425 ?m or less, as measured according to AOAC 965.22-1966. The process can also include separating the whole stillage to produce a fiber rich portion and a filtrate.
    Type: Grant
    Filed: February 7, 2022
    Date of Patent: May 21, 2024
    Assignee: POET GRAIN (OCTANE), LLC
    Inventor: Jason Bootsma
  • Patent number: 11976312
    Abstract: Provided is a method for preparing Rebaudioside C using an enzymatic method, comprising using rubusoside or dulcoside A as a substrate, and making the substrate, in the presence of a glycosyl donor, react under the catalysis of UDP-glycosyltransferase-containing recombinant cell and/or UDP-glycosyltransferase prepared therefrom to generate Rebaudioside C.
    Type: Grant
    Filed: March 30, 2022
    Date of Patent: May 7, 2024
    Assignee: PepsiCo, Inc.
    Inventors: Alex Tao, Guoqing Li, Wenxia Wang, Leilei Zheng, Chunlei Zhu, Xiaoliang Liang, Kuikiu Chan
  • Patent number: 11976313
    Abstract: Provided is a method for preparing rebaudioside N using an enzymatic method, comprising using rebaudioside A or rebaudioside J as a substrate, and making the substrate, in the presence of a glycosyl donor, react under the catalysis of a UDP-glycosyl-transferase and/or a UDP-glycosyltransferase-containing recombinant cell to generate rebaudioside N.
    Type: Grant
    Filed: May 16, 2022
    Date of Patent: May 7, 2024
    Assignee: PepsiCo, Inc.
    Inventors: Alex Tao, Guoqing Li, Wenxia Wang, Leilei Zheng, Chunlei Zhu, Xiaoliang Liang, Kuikiu Chan
  • Patent number: 11965197
    Abstract: Disclosed herein are novel microbial polycultures of two or more cell strains, capable of producing flavanones, flavonoids, and anthocyanidin-3-O-glucosides, and methods of use thereof. Also disclosed is a microbial cell capable of producing phenylpropanoic acids, and methods of use thereof.
    Type: Grant
    Filed: March 10, 2021
    Date of Patent: April 23, 2024
    Assignee: Rensselaer Polytechnic Institute
    Inventors: Mattheos Koffas, John Andrew Jones
  • Patent number: 11965167
    Abstract: This document relates to materials and methods for the production of protein. In one aspect, this document provides a first exogenous nucleic acid construct including a nucleotide sequence encoding an aminolevulinate synthase (ALAS) protein operably linked to a first promoter element, wherein the ALAS includes at least a first heme responsive motif (HRM), and wherein the ALAS includes a mutation in the first HRM, and a second exogenous nucleic acid construct comprising a nucleotide sequence encoding a heme-binding protein, wherein the second exogenous nucleic acid construct including a nucleotide sequence encoding the heme-binding protein is operably linked to the first promoter element or is operably linked to a second promoter element.
    Type: Grant
    Filed: April 24, 2020
    Date of Patent: April 23, 2024
    Assignee: Impossible Foods Inc.
    Inventors: Biswajoy Roy Chaudhuri, Smita Shankar
  • Patent number: 11959092
    Abstract: The present invention discloses a process for engineering a host cell comprising the steps of; a) integrating a first polynucleotide cassette including a first selection marker flanked by a first pair of recombination sites; b) removing the first selection marker by the action of a recombinase which recognises the first pair of recombination sites; c) integrating a second polynucleotide cassette including a second selection marker flanked by a second pair of recombination sites; and d) removing the second selection marker by the action of a recombinase which recognises the second pair of recombination sites. Also disclosed is a host cell genome polynucleotide comprising a first recombinantly engineered region and a second recombinantly engineered region, wherein a first single recombination site is adjacent to the first recombinantly engineered region, and a second single recombination site is adjacent to the second recombinantly engineered region.
    Type: Grant
    Filed: August 7, 2018
    Date of Patent: April 16, 2024
    Assignee: GLAXOSMITHKLINE BIOLOGICALS SA
    Inventors: Amirreza Faridmoayer, Michael Thomas Kowarik, Gerd Martin Lipowsky, Fabio Serventi
  • Patent number: 11952575
    Abstract: A transaminase mutant and use hereof, the amino acid sequence of the transaminase mutant is an amino acid sequence in which the amino acid sequence as represented by SEQ ID NO: 1 is mutated, the mutated amino acid position being one or more selected from among F89, K193, P243, V234, I262, Q280, V379, R416, A417 and C418. The enzymatic activity and/or stability of the transaminase mutant is improved.
    Type: Grant
    Filed: November 15, 2017
    Date of Patent: April 9, 2024
    Assignee: ASYMCHEM LIFE SCIENCE (TIANJIN) CO., LTD
    Inventors: Hao Hong, Gage James, Jiangping Lu, Xingfu Xu, Wenyan Yu, Xin Huang, Yulei Ma, Yibing Cheng
  • Patent number: 11946086
    Abstract: This invention is intended to identify a gene cluster involved in biosynthesis of a cyclic peptide compound produced by a filamentous fungus of the Curvularia species and to establish a system for synthesizing such cyclic peptide compound. The gene is composed of a first module to a tenth module and encodes a protein having activity of synthesizing a nonribosomal peptide constituting a basic peptide backbone of a cyclic peptide compound produced by a filamentous fungus of the Curvularia species.
    Type: Grant
    Filed: December 13, 2021
    Date of Patent: April 2, 2024
    Assignees: TOHOKU UNIVERSITY, KUMIAI CHEMICAL INDUSTRY CO., LTD.
    Inventors: Takashi Kubo, Masayuki Machida, Maiko Umemura, Keietsu Abe, Akira Yoshimi, Tomonori Fujioka, Shigenari Yamaguchi, Kiyoshi Kawai
  • Patent number: 11939599
    Abstract: Disclosed are a gene mining method combining functional sequence and structure simulation, an NADH-preferring phosphinothricin dehydrogenase mutant and an application thereof. The gene mining method comprises the following steps: (1) analyzing a characteristic sequence which an NADH-type glutamate dehydrogenase should have; (2) searching a gene library based on the characteristic sequence; (3) performing clustering analysis and protein structure simulation on genes obtained by the searching; (4) selecting genes that feature high gene aggregation and a protein structure similar to that of the known phosphinothricin dehydrogenase as candidate genes. A wild-type phosphinothricin dehydrogenase with an amino acid sequence as set forth in SEQ ID No.
    Type: Grant
    Filed: December 30, 2021
    Date of Patent: March 26, 2024
    Assignee: ZHEJIANG UNIVERSITY OF TECHNOLOGY
    Inventors: Yaping Xue, Feng Cheng, Jiamin Zhang, Shuping Zou, Jianmiao Xu, Yuguo Zheng