Patents by Inventor Ahmed A. Hussein

Ahmed A. Hussein has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240124863
    Abstract: Some aspects of this disclosure provide methods for phage-assisted continuous evolution (PACE) of proteases. Some aspects of this invention provide methods for evaluating and selecting protease inhibitors based on the likelihood of the emergence of resistant proteases as determined by the protease PACE methods provided herein. Some aspects of this disclosure provide strategies, methods, and reagents for protease PACE, including fusion proteins for translating a desired protease activity into a selective advantage for phage particles encoding a protease exhibiting such an activity and improved mutagenesis-promoting expression constructs. Evolved proteases that recognize target cleavage sites which differ from their canonical cleavage site are also provided herein.
    Type: Application
    Filed: August 3, 2023
    Publication date: April 18, 2024
    Applicant: President and Fellows of Harvard College
    Inventors: David R. Liu, Bryan Dickinson, Michael S. Packer, Ahmed Hussein Badran
  • Publication number: 20240088950
    Abstract: Radio frequency (RF) generators are disclosed. A RF generator may include a modulator configured to receive an arbitrary waveform and an RF carrier, and generate a pulsed radio frequency (RF). The arbitrary waveform may be generated via an analog signal generator external to the RF generator. Further, the RF generator may include an amplification stage configured to amplify the pulsed RF signal. RF generation systems and methods of generating a pulsed RF signal also disclosed.
    Type: Application
    Filed: April 11, 2023
    Publication date: March 14, 2024
    Inventor: Ahmed A. Hussein
  • Patent number: 11913040
    Abstract: Engineered transcriptional activator-like effectors (TALEs) are versatile tools for genome manipulation with applications in research and clinical contexts. One current drawback of TALEs is that the 5? nucleotide of the target is specific for thymine (T). TALE domains with alternative 5? nucleotide specificities could expand the scope of DNA target sequences that can be bound by TALEs. Another drawback of TALEs is their tendency to bind and cleave off-target sequence, which hampers their clinical application and renders applications requiring high-fidelity binding unfeasible. This disclosure provides methods and strategies for the continuous evolution of proteins comprising DNA-binding domains, e.g., TALE domains. In some aspects, this disclosure provides methods and strategies for evolving such proteins under positive selection for a desired DNA-binding activity and/or under negative selection against one or more undesired (e.g., off-target) DNA-binding activities.
    Type: Grant
    Filed: June 23, 2021
    Date of Patent: February 27, 2024
    Assignee: President and Fellows of Harvard College
    Inventors: David R. Liu, Basil Hubbard, Ahmed Hussein Badran
  • Publication number: 20230355813
    Abstract: Systems and methods for heteroaromatic silicon fluoride compounds as radiopharmaceuticals with theranostic properties are described. The theranostic heteroaromatic silicon fluoride compounds can be conjugated with various disease binding ligands and/or chelators for imaging and therapeutic applications.
    Type: Application
    Filed: April 20, 2023
    Publication date: November 9, 2023
    Applicant: Fuzionaire Diagnostics, Inc.
    Inventors: Christopher Martin Waldmann, Thomas A. Singleton, Anton A. Toutov, Carl Daniel Estrada, Prashant Suresh Deore, Julie Delecueillerie, Patrick DeRoy, Alexandre Larivée, Alexey Kostikov, Jean-Philip George Lumb, HyunJune Jun, En Zhao, Ryan Christopher Clark, Burhan Ahmed Hussein, Bren Jordan Perez Atienza
  • Patent number: 11760986
    Abstract: Some aspects of this disclosure provide methods for phage-assisted continuous evolution (PACE) of proteases. Some aspects of this invention provide methods for evaluating and selecting protease inhibitors based on the likelihood of the emergence of resistant proteases as determined by the protease PACE methods provided herein. Some aspects of this disclosure provide strategies, methods, and reagents for protease PACE, including fusion proteins for translating a desired protease activity into a selective advantage for phage particles encoding a protease exhibiting such an activity and improved mutagenesis-promoting expression constructs. Evolved proteases that recognize target cleavage sites which differ from their canonical cleavage site are also provided herein.
    Type: Grant
    Filed: December 16, 2020
    Date of Patent: September 19, 2023
    Assignee: President and Fellows of Harvard College
    Inventors: David R. Liu, Bryan Dickinson, Michael S. Packer, Ahmed Hussein Badran
  • Publication number: 20230220016
    Abstract: The disclosure provides amino acid sequence variants of Bacillus thuringiensis (Bt) toxins and methods of producing the same. Some aspects of this disclosure provide methods for generating Bt toxin variants by continuous directed evolution. Some aspects of this disclosure provide compositions and methods for pest control using the disclosed variant Bt toxins.
    Type: Application
    Filed: October 26, 2022
    Publication date: July 13, 2023
    Applicants: President and Fellows of Harvard College, Monsanto Company
    Inventors: David R. Liu, Ahmed Hussein Badran, Victor Guzov, Tom Malvar, Prashanth Vishwanath, Jeff Nageotte, Qing Huai, Melissa Kemp
  • Publication number: 20230197410
    Abstract: One or more example relate, generally, to generating radio frequency (RF) signals. An apparatus may include a signal generator, an amplification stage, and a feedback control loop. The signal generator may generate a pulsed radio frequency (RF) signal at least partially responsive to a digital pulsed waveform defined by one or more commands. The amplification stage may amplify the pulsed RF signal. The feedback control loop may be coupled to the amplification stage to regulate a power level of respective steps of the pulsed RF signal.
    Type: Application
    Filed: February 21, 2023
    Publication date: June 22, 2023
    Inventor: Ahmed A. Hussein
  • Patent number: 11681503
    Abstract: A method, system, and computer program product for implementing machine learning visual code and action generation is provided. The method includes receiving from a plurality of hardware and software sources, digital description data associated with visual presentations and an action for execution. A resulting code-based class for each portion of the digital description data is generated with respect to the visual presentation. Self learning software code is executed and a type of visual presentation is selected with respect to associated visual features and the code-based class. Additionally, a visual presentation is selected and an action is executed resulting in hardware and software of a server hardware device being operationally modified. The visual presentation is presented to a user.
    Type: Grant
    Filed: April 27, 2021
    Date of Patent: June 20, 2023
    Assignee: International Business Machines Corporation
    Inventor: Ahmed Hussein Mohamed Kamel El-Khouly
  • Patent number: 11626907
    Abstract: Radio frequency (RF) generators are disclosed. A RF generator may include a modulator configured to receive an arbitrary waveform and an RF carrier, and generate a pulsed radio frequency (RF). The arbitrary waveform may be generated via an analog signal generator external to the RF generator. Further, the RF generator may include an amplification stage configured to amplify the pulsed RF signal. RF generation systems and methods of generating a pulsed RF signal also disclosed.
    Type: Grant
    Filed: December 31, 2019
    Date of Patent: April 11, 2023
    Assignee: Analogic Corporation
    Inventor: Ahmed A. Hussein
  • Patent number: 11624130
    Abstract: Some aspects of this disclosure relate to systems, apparatuses, compositions (e.g., isolated nucleic acids and vectors), and methods for improving the stability and/or solubility of proteins evolved using phage-assisted continuous evolution (PACE). In some embodiments, vectors described herein comprise nucleic acids encoding selection systems (e.g., positive and/or negative selection systems) that link expression of genes required for production of infectious phage particles to a desirable physiochemical (e.g., stability or solubility) and/or desired function of an evolved protein.
    Type: Grant
    Filed: September 18, 2018
    Date of Patent: April 11, 2023
    Assignee: President and Fellows of Harvard College
    Inventors: David R. Liu, Ahmed Hussein Badran, Tina Wang
  • Patent number: 11619454
    Abstract: A heat exchanger (4) has fluid flow channels (6) with at least one heat exchanging surface (10) which has an undulating surface section for which the surface profile varies along a predetermined direction such that at a first edge (E1) the surface profile follows a first transverse wave (20), at a second edge (E)2 the surface profile follows a second transverse wave (22) and at an intermediate point I between the edges the surface profile follows a third transverse wave (24). The third transverse wave (24) has a different phase, frequency or amplitude to the first and second transverse waves so that chevron-shaped ridges and valleys are formed. This improves the mixing of fluid passing through the channel and hence the heat exchange efficiency.
    Type: Grant
    Filed: August 1, 2018
    Date of Patent: April 4, 2023
    Assignee: HIETA TECHNOLOGIES LIMITED
    Inventors: Ahmed Hussein, Javier Viñuales Navarro
  • Patent number: 11587767
    Abstract: Radio frequency (RF) generators are disclosed. A RF generator may include an analog signal generator configured to generate a pulsed analog signal responsive to a digital pulsed waveform defined by one or more commands. The RF generator may also include a modulator configured to generate a pulsed radio frequency (RF) signal by modulating an RF carrier using the pulsed analog signal as a modulating signal. Further, the RF generator may include an amplification stage configured to amplify the pulsed RF signal output by the modulator. RF generation systems and methods of generating a pulsed RF signal also disclosed.
    Type: Grant
    Filed: December 31, 2019
    Date of Patent: February 21, 2023
    Assignee: Analogic Corporation
    Inventor: Ahmed A. Hussein
  • Patent number: 11524983
    Abstract: The disclosure provides amino acid sequence variants of Bacillus thuringiensis (Bt) toxins and methods of producing the same. Some aspects of this disclosure provide methods for generating Bt toxin variants by continuous directed evolution. Some aspects of this disclosure provide compositions and methods for pest control using the disclosed variant Bt toxins.
    Type: Grant
    Filed: July 22, 2016
    Date of Patent: December 13, 2022
    Assignees: President and Fellows of Harvard College, Monsanto Company
    Inventors: David R. Liu, Ahmed Hussein Badran, Victor Guzov, Tom Malvar, Prashanth Vishwanath, Jeff Nageotte, Qing Huai, Melissa Kemp
  • Publication number: 20220342643
    Abstract: A method, system, and computer program product for implementing machine learning visual code and action generation is provided. The method includes receiving from a plurality of hardware and software sources, digital description data associated with visual presentations and an action for execution. A resulting code-based class for each portion of the digital description data is generated with respect to the visual presentation. Self learning software code is executed and a type of visual presentation is selected with respect to associated visual features and the code-based class. Additionally, a visual presentation is selected and an action is executed resulting in hardware and software of a server hardware device being operationally modified. The visual presentation is presented to a user.
    Type: Application
    Filed: April 27, 2021
    Publication date: October 27, 2022
    Inventor: Ahmed Hussein Mohamed Kamel El-Khouly
  • Publication number: 20220267754
    Abstract: Strategies, reagents, methods, and systems for modulating the mutation rate in cells are provided herein. The strategies, reagents, methods, and systems are broadly applicable for the modulation of mutation rates in cells where high mutation rates and/or control over a broad range of mutation rates is desired, for example, in the context of diversifying a nucleic acid sequence or a plurality of such sequences within a population of cells, for the generation of diversified nucleic acid libraries, and for directed evolution of nucleic acids and encoded products.
    Type: Application
    Filed: January 21, 2022
    Publication date: August 25, 2022
    Applicant: President and Fellows of Harvard College
    Inventors: Ahmed Hussein Badran, David R. Liu
  • Patent number: 11359872
    Abstract: A heat exchanger (4) comprises a heat exchanger core (20) comprising first fluid channels (22) and second fluid flow channels (24) for exchange of heat between the first and second fluids. First and second manifold portions (42, 44) are provided to guide the first and second fluids between the first and second fluid flow channels (22, 249 and first and second fluid interface portions (48, 49) which comprise fewer channels than the heat exchanger core (20). The first manifold portion (42) includes at least one tunnel portion (46) extending through the second manifold portion (44) at an angle to the direction of second fluid flow. Hence at least part of the first fluid is directed through the inside of the tunnel portion while the second fluid passes around the outside of the tunnel portion. This enables more compact heat exchanger design.
    Type: Grant
    Filed: May 18, 2018
    Date of Patent: June 14, 2022
    Assignee: HIETA TECHNOLOGIES LIMITED
    Inventors: Evert Hooijkamp, Niall Edward Hatfield, Ahmed Hussein, Stephen Mellor
  • Patent number: 11299729
    Abstract: Strategies, reagents, methods, and systems for modulating the mutation rate in cells are provided herein. The strategies, reagents, methods, and systems are broadly applicable for the modulation of mutation rates in cells where high mutation rates and/or control over a broad range of mutation rates is desired, for example, in the context of diversifying a nucleic acid sequence or a plurality of such sequences within a population of cells, for the generation of diversified nucleic acid libraries, and for directed evolution of nucleic acids and encoded products.
    Type: Grant
    Filed: April 15, 2016
    Date of Patent: April 12, 2022
    Assignee: President and Fellows of Harvard College
    Inventors: Ahmed Hussein Badran, David R. Liu
  • Publication number: 20210403887
    Abstract: Engineered transcriptional activator-like effectors (TALEs) are versatile tools for genome manipulation with applications in research and clinical contexts. One current drawback of TALEs is that the 5? nucleotide of the target is specific for thymine (T). TALE domains with alternative 5? nucleotide specificities could expand the scope of DNA target sequences that can be bound by TALEs. Another drawback of TALEs is their tendency to bind and cleave off-target sequence, which hampers their clinical application and renders applications requiring high-fidelity binding unfeasible. This disclosure provides methods and strategies for the continuous evolution of proteins comprising DNA-binding domains, e.g., TALE domains. In some aspects, this disclosure provides methods and strategies for evolving such proteins under positive selection for a desired DNA-binding activity and/or under negative selection against one or more undesired (e.g., off-target) DNA-binding activities.
    Type: Application
    Filed: June 23, 2021
    Publication date: December 30, 2021
    Applicant: President and Fellows of Harvard College
    Inventors: David R. Liu, Basil Hubbard, Ahmed Hussein Badran
  • Publication number: 20210271637
    Abstract: A computer-implemented method, system and computer program product for creating a descriptor for a dashboard template. The column-to-visualization mappings are extracted from a dashboard of a created or modified dashboard (or a created or modified dashboard template). Furthermore, the concept combinations from each visualization of the dashboard are extracted. Additionally, topics from the dashboard are extracted. The concept combinations, topics and column-to-visualization mappings are aggregated into a dashboard template descriptor. The dashboard template descriptor is then stored. In this manner, the dashboard template descriptor captures how concept combinations are used in the visualizations of the dashboard as well as how high-level concepts (topics) are incorporated in the dashboard. Furthermore, the dashboard template descriptor captures how the concepts of the columns of a dataset are mapped to the visualizations of the dashboard.
    Type: Application
    Filed: February 27, 2020
    Publication date: September 2, 2021
    Inventors: Firas Kazem, Laura Marie Alkhoury, Anthony Nicola Tasca, Ahmed Hussein Mohamed Kamel El-Khouly, Mohammed Mostafa
  • Publication number: 20210271709
    Abstract: A computer-implemented method, system and computer program product for recommending a template or a dataset. A descriptor (input descriptor) of the input, corresponding to a dataset or a dashboard template, is extracted or fetched. The input descriptor may be the descriptor of the dataset which includes topics and concept combinations. Alternatively, the input descriptor may be the descriptor of the dashboard template which includes topics, concept combinations and column-to-visualization mappings. Scores are then generated for the candidate targets, corresponding to dashboard templates or datasets, based on one or more of the following: matching topics in the input descriptor with topics in the candidate target descriptors, matching concept combinations in the input descriptor with concept combinations in the candidate target descriptors, and determining compatibility of the datasets with the dashboard templates.
    Type: Application
    Filed: February 27, 2020
    Publication date: September 2, 2021
    Inventors: Firas Kazem, Anthony Nicola Tasca, Laura Marie Alkhoury, Ahmed Hussein Mohamed Kamel El-Khouly, Mohammed Mostafa