Patents by Inventor Akira Tsugita

Akira Tsugita has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 8119411
    Abstract: The present invention provides a method for analyzing the C-terminal amino acid sequence of a peptide by using a reaction for successively releasing the C-terminal amino acids of the peptide, which method can suppress, when successively releasing the C-terminal amino acids of a peptide of long amino acid length, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide and can carry out the chemical treatment thereof under widely applicable conditions; In the method, a dry sample of a peptide with long amino acid length is beforehand subjected to an N-acylation treatment; by using a reaction reagent where an alkanoic acid anhydride is combined with a small amount of a perfluoroalkanoic acid, successive release of C-terminal amino acids is conducted under mild conditions; a hydrolysis treatment is applied; then, selective fragmentization at site of arginine residue is performed by digestion by trypsin; thereafter, decreases in molecular weight are measured for the
    Type: Grant
    Filed: December 20, 2010
    Date of Patent: February 21, 2012
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Hiroaki Torii
  • Publication number: 20110183428
    Abstract: The present invention provides a method for analyzing the C-terminal amino acid sequence of a peptide by using a reaction for successively releasing the C-terminal amino acids of the peptide, which method can suppress, when successively releasing the C-terminal amino acids of a peptide of long amino acid length, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide and can carry out the chemical treatment thereof under widely applicable conditions; In the method, a dry sample of a peptide with long amino acid length is beforehand subjected to an N-acylation treatment; by using a reaction reagent where an alkanoic acid anhydride is combined with a small amount of a perfluoroalkanoic acid, successive release of C-terminal amino acids is conducted under mild conditions; a hydrolysis treatment is applied; then, selective fragmentization at site of arginine residue is performed by digestion by trypsin; thereafter, decreases in molecular weight are measured for the
    Type: Application
    Filed: December 20, 2010
    Publication date: July 28, 2011
    Applicant: NEC CORPORATION
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Hiroaki Torii
  • Publication number: 20110053196
    Abstract: The present invention is to provide a method for easily and specifically modifying specific amino acid residue(s) constituting a peptide and to provide a methodology of improving the accuracy of identification of the peptide using a new information of the peptide obtained from the number of modified amino acid residue by said specific modification method as mentioned. The method for modifying a peptide according to the present invention is characterized: A method for modifying a peptide, wherein the peptide as supported in a substrate and an aqueous solution of perhalogenated carboxylic acid containing an alcohol is reacted to selectively esterify a glutamic acid residue of said peptide.
    Type: Application
    Filed: February 8, 2007
    Publication date: March 3, 2011
    Applicant: NEC CORPORATION
    Inventors: Kenji Miyazaki, Yo Tabuse, Hirotaka Minagawa, Emiko Saito, Ken'ichi Kamijo, Akira Tsugita, Kozue Tsugita
  • Patent number: 7879616
    Abstract: The present invention provides a method for analyzing the C-terminal amino acid sequence of a peptide by using a reaction for successively releasing the C-terminal amino acids of the peptide, which method can suppress, when successively releasing the C-terminal amino acids of a peptide of long amino acid length, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide and can carry out the chemical treatment thereof under widely applicable conditions; In the method, a dry sample of a peptide with long amino acid length is beforehand subjected to an N-acylation treatment; by using a reaction reagent where an alkanoic acid anhydride is combined with a small amount of a perfluoroalkanoic acid, successive release of C-terminal amino acids is conducted under mild conditions; a hydrolysis treatment is applied; then, selective fragmentization at site of arginine residue is performed by digestion by trypsin; thereafter, decreases in molecular weight are measured for the
    Type: Grant
    Filed: December 25, 2003
    Date of Patent: February 1, 2011
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Hiroaki Torii
  • Publication number: 20100167326
    Abstract: The present invention is to provide a method for cleavage of peptidic bond at C terminal of peptide and a method for determination of C terminal amino acid sequence of peptide without the decrease of the sensitivity and with preventing the subsidiary reaction. The method for cleavage of peptidic bond at C terminal of peptide according to the present invention is characterized as follows: A method for cleavage of peptidic bond at C terminal of peptide comprising the steps of: reacting a peptide with a solution of perhalogenated carboxylic acid containing alcohol to esterify glutamic acid residue of said peptide; and reacting said peptide with alkanoic acid anhydride to obtain C terminal-deleted peptide in which the amino acid residue of said peptide at C terminal is sequentially deleted.
    Type: Application
    Filed: February 8, 2007
    Publication date: July 1, 2010
    Applicant: NEC CORPORATION
    Inventors: Kenji Miyazaki, Ken'ichi Kamijo, Akira Tsugita, Kozue Tsugita
  • Patent number: 7670841
    Abstract: The present invention provides, as a method of analyzing the C-terminal amino acid sequence of a peptide with use of reaction technique for successively releasing the C-terminal amino acids, in which undesirable side reactions, such as cleavage of a peptide bond at the middle of the peptide, can be prevented and chemical treatments therein can be carried out under widely applicable conditions in the course of successive release of the C-terminal amino acids from a peptide, such a method comprising steps of dehydrating the gel on which a target peptide that has been separated by gel electrophoresis is held in the bound state; immersing it in a mixture solution of an alkanoic acid anhydride added with a small amount of a perfluoroalkanoic acid in a dipolar aprotic solvent to re-swell the gel carrier, forming a 5-oxazolone structure, at a temperature chosen in the range of from 30° C. to 80° C.
    Type: Grant
    Filed: November 28, 2003
    Date of Patent: March 2, 2010
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Takuji Nabetani
  • Patent number: 7651859
    Abstract: The present invention provides, as for a method for analyzing the C-terminal amino acid sequence of a peptide by using a reaction for successively releasing the C-terminal amino acids of the peptide, which method can suppress, when successively releasing the C-terminal amino acids of a peptide of long amino acid length, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide and can carry out the chemical treatment thereof under widely applicable conditions, a following method wherein a dry sample of a peptide with long amino acid length is beforehand subjected to an N-acylation treatment; by using a reaction reagent where an alkanoic acid anhydride is combined with a small amount of a perfluoroalkanoic acid, successive release of C-terminal amino acids is conducted under mild conditions; a hydrolysis treatment is applied; then, selective fragmentization at site of arginine residue is performed by digestion by trypsin; thereafter, decreases in molecular weight
    Type: Grant
    Filed: December 4, 2003
    Date of Patent: January 26, 2010
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Takuji Nabetani
  • Patent number: 7588944
    Abstract: An analyte peptide is selectively degraded sequentially by using an alkanoic anhydride (S101). The original peptide and a series of degradation reaction products having peptide in which one or more C-terminal-sided amino acids are deleted, are subjected to a certain posttreatment (S102). The molecular weight of the reaction products is measured by mass spectrometry (S103). And, the amino acid sequence of the original peptide from C-terminal is determined, based on the molecular weight obtained by mass spectrometry (S104).
    Type: Grant
    Filed: August 24, 2004
    Date of Patent: September 15, 2009
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo
  • Publication number: 20090140136
    Abstract: The primary structure or the modification state of a protein is analyzed in detail. First, an analyte protein is subjected to PMF analysis (S101), and the gene of the protein is identified. Unidentified peaks not corresponding to the peaks of hypothetical peptide fragments are extracted, by comparing the hypothetical mass spectrum with the mass spectrum obtained by mass spectrometry of a sample protein (S102). Then, the unidentified peaks obtained are analyzed, and thus, the structure or properties of the protein, the presence and the kind of modification of amino acid residues, amino acid substitution, generation of mutants, and terminal cleavage are analyzed (S103).
    Type: Application
    Filed: February 8, 2005
    Publication date: June 4, 2009
    Applicant: NEC CORPORATION
    Inventors: Hiroaki Torii, Kenji Miyazaki, Kenichi Kamijo, Akira Tsugita
  • Publication number: 20080213911
    Abstract: An analyte peptide is selectively degraded sequentially by using an alkanoic anhydride (S101). The original peptide and a series of degradation reaction products having peptide in which one or more C-terminal-sided amino acids are deleted, are subjected to a certain posttreatment (S102). The molecular weight of the reaction products is measured by mass spectrometry (S103). And, the amino acid sequence of the original peptide from C-terminal is determined, based on the molecular weight obtained by mass spectrometry (S104).
    Type: Application
    Filed: August 24, 2004
    Publication date: September 4, 2008
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo
  • Patent number: 7384790
    Abstract: The present invention provides a method for analyzing the C-terminal amino acid sequence of a peptide by applying reaction technique for successively releasing the C-terminal amino acids therefrom, which method can suppress, when releasing the C-terminal amino acids of the peptide in sequence, such as an undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide, and allows to carry out the chemical treatment thereof under widely applicable conditions. In the method according to the present invention, an alkanoic acid anhydride and a perfluoroalkanoic acid both of vapor phase, which are supplied from a mixture containing an alkanoic acid anhydride with a small amount of a perfluoroalkanoic acid added thereto, are allowed to act on a dry sample of the peptide to be examined in a dry atmosphere at a temperature chosen in a range of 15 to 60° C.
    Type: Grant
    Filed: March 24, 2003
    Date of Patent: June 10, 2008
    Assignee: NEC Corporation
    Inventors: Kenji Miyazaki, Akira Tsugita, Naoyuki Takahashi, Takuji Nabetani, Toshimasa Yamazaki, Kenichi Kamijo
  • Publication number: 20070148720
    Abstract: The present invention provides an approach for identifying with high accuracy, a known protein or a variant of the known protein derived from the same genomic gene as in a target protein to be analyzed, based on a mass spectrometric result of a plurality of peptide fragments obtained from site-specific enzymatic digestion of the target protein to be analyzed by referring to nucleotide sequences of genes encoding known proteins on a database and to deduced full-length amino acid sequences thereof.
    Type: Application
    Filed: December 17, 2004
    Publication date: June 28, 2007
    Inventors: Hiroaki Torii, Kenji Miyazaki, Kenichi Kamijo, Akira Tsugita
  • Patent number: 7112446
    Abstract: In a method for efficiently analyzing a posttranslational modification of a protein using no enzyme, a protein or peptide to be analyzed is reacted with an acid (a thioester or hydrazine) under certain conditions. This makes it possible to detect variously modified states of a protein or peptide, whereby the identification of each specific modifying group and the position of each modified amino acid can be efficiently analyzed using a chemical method and a mass spectrometric apparatus.
    Type: Grant
    Filed: March 14, 2002
    Date of Patent: September 26, 2006
    Assignees: Tokyo Rikakikai Co., Ltd., NEC Corporation
    Inventors: Hirotaka Minagawa, Ichiro Ishida, Akira Tsugita, Takuji Nabetani
  • Publication number: 20060177887
    Abstract: Provided a method of acquiring information on internal sequence which is applicable to a trace amount of protein and has a high reliability. A protein to be analyzed is limitedly cleaved at a specified position of amino acid to prepare a mixture of a plurality of peptide fragments; one or more peptide fragments are isolated and purified from the peptide fragment mixture; C-terminal amino acids of the isolated and purified peptide fragment are successively released by chemical reaction to prepare a mixture containing a series of resulting products; mass spectrometry is applied to both the reaction products of the successive truncation and unreacted peptide fragment not subjected to the successive truncation reaction; then results of the mass spectrometry is analyzed to acquire chemical structure information of the target protein.
    Type: Application
    Filed: January 3, 2006
    Publication date: August 10, 2006
    Inventors: Kenji Miyazaki, Hiroaki Torii, Kenichi Kamijo, Akira Tsugita
  • Publication number: 20060134720
    Abstract: The present invention provides a method for analyzing the C-terminal amino acid sequence of a peptide by using a reaction for successively releasing the C-terminal amino acids of the peptide, which method can suppress, when successively releasing the C-terminal amino acids of a peptide of long amino acid length, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide and can carry out the chemical treatment thereof under widely applicable conditions; In the method, a dry sample of a peptide with long amino acid length is beforehand subjected to an N-acylation treatment; by using a reaction reagent where an alkanoic acid anhydride is combined with a small amount of a perfluoroalkanoic acid, successive release of C-terminal amino acids is conducted under mild conditions; a hydrolysis treatment is applied; then, selective fragmentization at site of arginine residue is performed by digestion by trypsin; thereafter, decreases in molecular weight are measured for the
    Type: Application
    Filed: December 25, 2003
    Publication date: June 22, 2006
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Hiroaki Torii
  • Publication number: 20060057731
    Abstract: The present invention provides, as for a method for analyzing the C-terminal amino acid sequence of a peptide by using a reaction for successively releasing the C-terminal amino acids of the peptide, which method can suppress, when successively releasing the C-terminal amino acids of a peptide of long amino acid length, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide and can carry out the chemical treatment thereof under widely applicable conditions, a following method wherein a dry sample of a peptide with long amino acid length is beforehand subjected to an N-acylation treatment; by using a reaction reagent where an alkanoic acid anhydride is combined with a small amount of a perfluoroalkanoic acid, successive release of C-terminal amino acids is conducted under mild conditions; a hydrolysis treatment is applied; then, selective fragmentization at site of arginine residue is performed by digestion by trypsin; thereafter, decreases in molecular weight
    Type: Application
    Filed: December 4, 2003
    Publication date: March 16, 2006
    Applicants: NEC Corporation, Tokyo Rikakikai Co., Ltd.
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Takuji Nabetani
  • Publication number: 20060030052
    Abstract: The present invention provides, as a method of analyzing the C-terminal amino acid sequence of a peptide with use of reaction technique for successively releasing the C-terminal amino acids, in which undesirable side reactions, such as cleavage of a peptide bond at the middle of the peptide, can be prevented and chemical treatments therein can be carried out under widely applicable conditions in the course of successive release of the C-terminal amino acids from a peptide, such a method comprising steps of dehydrating the gel on which a target peptide that has been separated by gel electrophoresis is held in the bound state; immersing it in a mixture solution of an alkanoic acid anhydride added with a small amount of a perfluoroalkanoic acid in a dipolar aprotic solvent to re-swell the gel carrier, forming a 5-oxazolone structure, at a temperature chosen in the range of from 30° C. to 80° C.
    Type: Application
    Filed: November 28, 2003
    Publication date: February 9, 2006
    Inventors: Kenji Miyazaki, Akira Tsugita, Kenichi Kamijo, Takuji Nabetani
  • Publication number: 20050074832
    Abstract: The present invention provides a method for analyzing the C-terminal amino acid sequence of a peptide by applying reaction technique for successively releasing the C-terminal amino acids therefrom, which method can suppress, when releasing the C-terminal amino acids of the peptide in sequence, such a undesirable side reaction as cleavage of peptide bond in the intermediate position of the peptide, and allows to carry out the chemical treatment thereof under widely applicable conditions. In the method according to the present invention, an alkanoic acid anhydride and a perfluoroalkanoic acid both of vapor phase, which are supplied from a mixture containing an alkanoic acid anhydride with a small amount of a perfluoroalkanoic acid added thereto, are allowed to act on a dry sample of the peptide to be examined in a dry atmosphere at a temperature chosen in a range of 15 to 60° C.
    Type: Application
    Filed: March 24, 2003
    Publication date: April 7, 2005
    Inventors: Kenji Miyazaki, Akira Tsugita, Naoyuki Takahashi, Takuji Nabetani, Toshimasa Yamazaki, Kenichi Kamijo
  • Publication number: 20040014229
    Abstract: In a method for efficiently analyzing a posttranslational modification of a protein using no enzyme, a protein or peptide to be analyzed is reacted with an acid (a thioester or hydrazine) under certain conditions. This makes it possible to detect variously modified states of a protein or peptide, whereby the identification of each specific modifying group and the position of each modified amino acid can be efficiently analyzed using a chemical method and a mass spectrometric apparatus.
    Type: Application
    Filed: March 14, 2002
    Publication date: January 22, 2004
    Applicants: NEC CORPORATION, TOKYO RIKAKIKAI CO., LTD.
    Inventors: Hirotaka Minagawa, Ichiro Ishida, Akira Tsugita, Takuji Nabetani
  • Patent number: 6046053
    Abstract: A process is disclosed for sequencing proteins or peptides from the C-terminal end. The process comprises the steps of reacting the peptide or protein with an alkyl acid anhydride to convert the carboxy-terminal thereof into oxazolone, liberating the C-terminal amino acid by reaction with acid and alcohol or with ester, and identifying the liberated amino acid or amino acid derivative.
    Type: Grant
    Filed: May 23, 1997
    Date of Patent: April 4, 2000
    Assignee: Seiko Instruments Inc.
    Inventors: Akira Tsugita, Keiji Takamoto, Tatsuaki Ataka, Toshihiko Sakuhara, Toyoaki Uchida