Patents by Inventor Alan Waggoner
Alan Waggoner has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Patent number: 9995679Abstract: Biosensor comprising an activatable acceptor fluorogen linked via a linker to a donor which transfers energy to the fluorogen on detecting an analyte wherein the fluorogen component reacts and a 100 fold increase in intensity results when the fluorogen interacts non-covalently with an activator e.g. fluorogen activator peptide.Type: GrantFiled: May 25, 2011Date of Patent: June 12, 2018Assignee: Carnegie Mellon UniversityInventors: Alan Waggoner, Marcel P. Bruchez, Brigitte F. Schmidt, Subhasish K. Chakraborty
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Patent number: 9249306Abstract: The present invention presents designs for high extinction quenched “dyedrons” that can be activated by conversion of a single acceptor/quencher in the molecular assembly to a fluorescent state. The quencher is activated by noncovalent binding to a unique complementary expressible fluorogen activating peptide (FAP). In this way, the quencher serves as the homogeneous switch, receiving energy efficiently from each of the donor molecules of the dendronic antenna, and releasing it as fluorescence only when activated by binding. The sum of the extinction of the multiple dyes on the antenna will provide dramatic enhancements in the effective brightness of the probe in standard imaging systems. This approach provides a set of probes with exceptional brightness, specifically targeted to an expressed tag that activates the fluorescence of the dyedron.Type: GrantFiled: February 16, 2010Date of Patent: February 2, 2016Assignee: Carnegie Mellon UniversityInventors: Marcel P. Bruchez, Lauren A. Ernst, James Fitzpatrick, Chris Szent-Gyorgyi, Brigitte F. Schmidt, Alan Waggoner
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Publication number: 20130244891Abstract: Biosensor comprising an activatable acceptor fluorogen linked via a linker to a donor which transfers energy to the fluorogen on detecting an analyte wherein the fluorogen component reacts and a 100 fold increase in intensity results when the fluorogen interacts non-covalently with an activator e.g. fluorogen activator peptide.Type: ApplicationFiled: May 25, 2011Publication date: September 19, 2013Applicant: CARNEGIE MELLON UNIVERSITYInventors: Alan Waggoner, Marcel P. Bruchez, Brigitte F. Schmidt, Subhasish K. Chakraborty
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Publication number: 20120058494Abstract: The present invention presents designs for high extinction quenched “dyedrons” that can be activated by conversion of a single acceptor/quencher in the molecular assembly to a fluorescent state. The quencher is activated by noncovalent binding to a unique complementary expressible fluorogen activating peptide (FAP). In this way, the quencher serves as the homogeneous switch, receiving energy efficiently from each of the donor molecules of the dendronic antenna, and releasing it as fluorescence only when activated by binding. The sum of the extinction of the multiple dyes on the antenna will provide dramatic enhancements in the effective brightness of the probe in standard imaging systems. This approach provides a set of probes with exceptional brightness, specifically targeted to an expressed tag that activates the fluorescence of the dyedron.Type: ApplicationFiled: February 16, 2010Publication date: March 8, 2012Applicant: CARNEGIE MELLON UNIVERSITYInventors: Marcel P. Bruchez, Lauren A. Ernst, James Fitzpatrick, Chris Szent-Gyorgyi, Brigitte F. Schmidt, Alan Waggoner
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Patent number: 7598047Abstract: A process and a kit are provided for detecting differences in two or more samples of protein, including proteins bearing post-translational modifications and peptides. Proteins are prepared, for example, from each of a different group of cell samples or body fluid samples to be compared. Each protein extract is labeled with a different one of a luminescent dye from a matched set of dyes. The matched dyes have generally the same ionic and pH characteristics but emit light at different wavelengths to exhibit a different color upon luminescence detection. The labeled protein extracts are mixed together and separated together by electrophoresis or a chromatographic method. The separation is observed to detect proteins unique to one sample or present in a greater ratio in one sample than in the other. Those unique or excess proteins will fluoresce the color of one of the dyes used. Proteins common to each sample migrate together and fluoresce the same.Type: GrantFiled: November 14, 2003Date of Patent: October 6, 2009Assignee: Carnegie Mellon UniversityInventors: Jonathan Minden, Alan Waggoner, Susan Janet Fowler
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Patent number: 7566544Abstract: A process and a kit are provided for detecting differences in two or more samples of protein, including proteins bearing post-translational modifications and peptides. Proteins are prepared, for example, from each of a different group of cell samples or body fluid samples to be compared. Each protein extract is labeled with a different one of a luminescent dye from a matched set of dyes. The matched dyes have generally the same ionic and pH characteristics but emit light at different wavelengths to exhibit a different color upon luminescence detection. The labeled protein extracts are mixed together and separated together by electrophoresis or a chromatographic method. The separation is observed to detect proteins unique to one sample or present in a greater ratio in one sample than in the other. Those unique or excess proteins will fluoresce the color of one of the dyes used. Proteins common to each sample migrate together and fluoresce the same.Type: GrantFiled: May 1, 2002Date of Patent: July 28, 2009Assignee: Carnegie Mellon UniversityInventors: Jonathan Minden, Alan Waggoner, Susan Janet Fowler
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Publication number: 20070243527Abstract: Disclosed are analogues of trimethine cyanine dyes which are useful for imparting fluorescent properties to target materials by covalent and non-covalent association.Type: ApplicationFiled: January 27, 2003Publication date: October 18, 2007Inventors: Alan Waggoner, Ratnakar Mujumdar
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Publication number: 20060199949Abstract: The present invention pertains to luminescent dyes and methods for covalently attaching the dyes to a component or mixture of components so that the components may be detected and/or quantified by luminescence detection methods. The dyes are cyanine and cyanine-type dyes that contain or are derivatized to contain a reactive group. The reactive group is covalently reactive with amine, hydroxy and/or sulfhydryl groups on the component so that the dye can be covalently bound to the component. In addition, the dyes are preferably soluble in aqueous or other medium in which the component is contained. The components to be labeled can be either biological materials, such as antibodies, antigens, peptides, nucleotides, hormones, drugs, or non-biological materials, such as polymers, glass, or other surfaces. Any luminescent or light absorbing detecting step can be employed in the method of the invention.Type: ApplicationFiled: August 4, 2005Publication date: September 7, 2006Applicant: Carnegie Mellon UniversityInventor: Alan Waggoner
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Publication number: 20060019408Abstract: A fundamental biosensor for detection of biological or environmental analytes is provided. The biosensor comprises a selectivity component for recognition of a target molecule and a reporter molecule that is sensitive to changes in the microenvironment. Methods of using the biosensor are also provided, including in vivo and in vitro applications using biosensor molecules that optionally may be attached to a surface.Type: ApplicationFiled: March 11, 2005Publication date: January 26, 2006Inventors: Alan Waggoner, Bruce Armitage, William Brown
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Publication number: 20040161780Abstract: A process and a kit are provided for detecting differences in two or more samples of protein, including proteins bearing post-translational modifications and peptides. Proteins are prepared, for example, from each of a different group of cell samples or body fluid samples to be compared. Each protein extract is labeled with a different one of a luminescent dye from a matched set of dyes. The matched dyes have generally the same ionic and pH characteristics but emit light at different wavelengths to exhibit a different color upon luminescence detection. The labeled protein extracts are mixed together and separated together by electrophoresis or a chromatographic method. The separation is observed to detect proteins unique to one sample or present in a greater ratio in one sample than in the other. Those unique or excess proteins will fluoresce the color of one of the dyes used. Proteins common to each sample migrate together and fluoresce the same.Type: ApplicationFiled: November 14, 2003Publication date: August 19, 2004Inventors: Jonathan Minden, Alan Waggoner, Susan Janet Fowler
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Publication number: 20020177122Abstract: A process and a kit are provided for detecting differences in two or more samples of protein, including proteins bearing post-translational modifications and peptides. Proteins are prepared, for example, from each of a different group of cell samples or body fluid samples to be compared. Each protein extract is labeled with a different one of a luminescent dye from a matched set of dyes. The matched dyes have generally the same ionic and pH characteristics but emit light at different wavelengths to exhibit a different color upon luminescence detection. The labeled protein extracts are mixed together and separated together by electrophoresis or a chromatographic method. The separation is observed to detect proteins unique to one sample or present in a greater ratio in one sample than in the other. Those unique or excess proteins will fluoresce the color of one of the dyes used. Proteins common to each sample migrate together and fluoresce the same.Type: ApplicationFiled: May 1, 2002Publication date: November 28, 2002Inventors: Jonathan Minden, Alan Waggoner, Susan Janet Fowler
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Patent number: 6426190Abstract: A process and a kit are provided for detecting differences in two or more samples of protein, including proteins bearing post-translational modifications and peptides. Proteins are prepared, for example, from each of a different group of cell samples or body fluid samples to be compared. Each protein extract is labeled with a different one of a luminescent dye from a matched set of dyes. The matched dyes have generally the same ionic and pH characteristics but emit light at different wavelengths to exhibit a different color upon luminescence detection. The labeled protein extracts are mixed together and separated together by electrophoresis or a chromatographic method. The separation is observed to detect proteins unique to one sample or present in a greater ratio in one sample than in the other. Those unique or excess proteins will fluoresce the color of one of the dyes used. Proteins common to each sample migrate together and fluoresce the same.Type: GrantFiled: August 9, 1999Date of Patent: July 30, 2002Assignee: Carnegie Mellon UniversityInventors: Jonathan Minden, Alan Waggoner, Susan Janet Fowler
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Patent number: 6127134Abstract: A process and a kit are provided for detecting differences in two or more samples of protein. Protein extracts are prepared, for example, from each of a different group of cell samples to be compared. Each protein extract is labeled with a different one of a luminescent dye from a matched set of dyes. The matched dyes have generally the same ionic and pH characteristics but emit light at different wavelengths to exhibit a different color upon luminescence detection. The labeled protein extracts are mixed together and electrophoresed together. The gel is observed to detect proteins unique to one sample or present in a greater ratio in one sample than in the other. Those unique or excess proteins will fluoresce the color of one of the dyes used. Proteins common to each sample migrate together and fluoresce the same.Type: GrantFiled: April 20, 1995Date of Patent: October 3, 2000Assignee: Carnegie Mellon UniversityInventors: Jonathan Minden, Alan Waggoner
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Patent number: 6043025Abstract: A process and a kit are provided for detecting differences in two or more samples of protein. Protein extracts are prepared, for example, from each of a different group of cell samples to be compared. Each protein extract is labeled with a different one of a luminescent dye from a matched set of dyes. The matched dyes have generally the same ionic and pH characteristics but emit light at different wavelengths to exhibit a different color upon luminescence detection. The labeled protein extracts are mixed together and electrophoresed together. The gel is observed to detect proteins unique to one sample or present in a greater ratio in one sample than in the other. Those unique or excess proteins will fluoresce the color of one of the dyes used. Proteins common to each sample migrate together and fluoresce the same.Type: GrantFiled: October 10, 1997Date of Patent: March 28, 2000Assignee: Carnegie Mellon UniversityInventors: Jonathan Minden, Alan Waggoner