Patents by Inventor Ales Prokop

Ales Prokop has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20120156763
    Abstract: An apparatus and methods for using biological material to discriminate an agent. In one embodiment of the present invention, the method includes the steps of providing at least one cell, exposing at least one cell to an agent, measuring the response of the cell to the agent in terms of a physical quantity related to at least one of the cellular physiological activities of the cell, and identifying the agent from the measured response. The method further includes the step of quantifying the agent from the measured response.
    Type: Application
    Filed: August 25, 2011
    Publication date: June 21, 2012
    Applicant: VANDERBILT UNIVERSITY
    Inventors: John P. Wikswo, Franz J. Baudenbacher, R. Robert Balcarcel, Theodore A. Bapty, David Cliffel, Sven Eklund, Owen McGuinness, Todd Monroe, Ales Prokop, Mark Andrew Stremler, Andreas Augustinus Werdich, Yang Yuansheng
  • Publication number: 20120003729
    Abstract: A bioreactor for cultivating living cells in a liquid medium. In one embodiment of the present invention, the bioreactor includes a first substrate having a first surface, an opposite second surface and edges. The bioreactor further includes a second substrate having a first surface and an opposite second surface, defining a cavity with a bottom surface, where the bottom surface is located therebetween the first surface and the second surface. The first surface of the first substrate is received by the second surface of the second substrate to cover the cavity so as to form a channel for receiving cells and a liquid medium. In forming the bioreactor, the channel is sized to allow the growth of a layer of cells on a biocompatible coating layer and a flow of liquid in the channel. The flow of liquid is controlled so as to provide a known shear force to the layer of cells. The flow of liquid can be further controlled so as to provide an environment that simulates a vascular space in the channel.
    Type: Application
    Filed: July 1, 2011
    Publication date: January 5, 2012
    Applicant: VANDERBILT UNIVERSITY
    Inventors: John P. Wikswo, Franz J. Baudenbacher, Ales Prokop, Eugene J. Leboeuf, Chang Y. Chung, David Cliffel, Frederick R. Haselton, William H. Hofmeister, Charles P. Lin, Lisa J. McCawley, Randall S. Reiserer, Mark A. Stremler
  • Publication number: 20110294202
    Abstract: A bioreactor for cultivating living cells in a liquid medium. In one embodiment of the present invention, the bioreactor has a first substrate having a first surface and an opposite second surface, defining a chamber therebetween for receiving the cells and the liquid medium. The bioreactor further has a barrier dividing the chamber into a first subchamber and a second subchamber, wherein the barrier has a porosity to allow the first subchamber and the second subchamber in fluid communication and allow at least one predetermined type of cells to permeate between the first subchamber and the second subchamber.
    Type: Application
    Filed: May 26, 2011
    Publication date: December 1, 2011
    Applicant: VANDERBILT UNIVERSITY
    Inventors: John P. Wikswo, Franz J. Baudenbacher, David Cliffel, Frederick R. Haselton, Eugene J. Leboeuf, Ales Prokop, Randall S. Reiserer, Mark A. Stremler
  • Patent number: 8003378
    Abstract: A bioreactor for cultivating living cells in a liquid medium. In one embodiment of the present invention, the bioreactor includes a first substrate having a first surface, an opposite second surface and edges. The bioreactor further includes a second substrate having a first surface and an opposite second surface, defining a cavity with a bottom surface, where the bottom surface is located therebetween the first surface and the second surface. The first surface of the first substrate is received by the second surface of the second substrate to cover the cavity so as to form a channel for receiving cells and a liquid medium. In forming the bioreactor, the channel is sized to allow the growth of a layer of cells on a biocompatible coating layer and a flow of liquid in the channel. The flow of liquid is controlled so as to provide a known shear force to the layer of cells. The flow of liquid can be further controlled so as to provide an environment that simulates a vascular space in the channel.
    Type: Grant
    Filed: March 5, 2009
    Date of Patent: August 23, 2011
    Assignee: Vanderbilt University
    Inventors: John P. Wikswo, Franz J. Baudenbacher, Ales Prokop, Eugene LeBoeuf, Chang Y. Chung, David E. Cliffel, Frederick R. Haselton, William H. Hofmeister, Charles P. Lin, Lisa J. McCawley, Randall S. Reiserer, Mark A. Stremler
  • Patent number: 7977089
    Abstract: A bioreactor for cultivating living cells in a liquid medium. In one embodiment of the present invention, the bioreactor has a first substrate having a first surface and an opposite second surface, defining a chamber therebetween for receiving the cells and the liquid medium. The bioreactor further has a barrier dividing the chamber into a first subchamber and a second subchamber, wherein the barrier has a porosity to allow the first subchamber and the second subchamber in fluid communication and allow at least one predetermined type of cells to permeate between the first subchamber and the second subchamber.
    Type: Grant
    Filed: August 27, 2003
    Date of Patent: July 12, 2011
    Assignee: Vanderbilt University
    Inventors: John P. Wikswo, Franz J. Baudenbacher, David Cliffel, Frederick R. Haselton, Eugene J. Leboeuf, Ales Prokop, Randall S. Reiserer, Mark A. Stremler
  • Patent number: 7704745
    Abstract: An apparatus and methods for monitoring the status of a cell that consumes oxygen. In one embodiment of the present invention, the method includes the steps of confining the cell in a sensing volume, measuring dynamically intracellular or extracellular signaling of the cell, and determining the status of the cell from the measured intracellular or extracellular signaling of the cell.
    Type: Grant
    Filed: August 6, 2002
    Date of Patent: April 27, 2010
    Assignee: Vanderbilt University
    Inventors: Franz Baudenbacher, John P. Wikswo, R. Robert Balcarcel, David Cliffel, Sven Eklund, Jonathan Mark Gilligan, Owen McGuinness, Todd Monroe, Ales Prokop, Mark Andrew Stremler, Andreas Augustinus Werdich
  • Publication number: 20090305319
    Abstract: An apparatus and methods for monitoring the status of a cell that consumes oxygen. In one embodiment of the present invention, the method includes the steps of confining the cell in a sensing volume, measuring dynamically intracellular or extracellular signaling of the cell, and determining the status of the cell from the measured intracellular or extracellular signaling of the cell.
    Type: Application
    Filed: August 6, 2002
    Publication date: December 10, 2009
    Inventors: Franz J. Baudenbacher, John P. Wikswo, R. Robert Balcarcel, David Cliffel, Sven Eklund, Jonathan Mark Gilligan, Owen McGuinness, Todd Monroe, Ales Prokop, Mark Andrew Stremler, Andreas Augustinus Werdich
  • Publication number: 20090215654
    Abstract: A bioreactor for cultivating living cells in a liquid medium. In one embodiment of the present invention, the bioreactor includes a first substrate having a first surface, an opposite second surface and edges. The bioreactor further includes a second substrate having a first surface and an opposite second surface, defining a cavity with a bottom surface, where the bottom surface is located therebetween the first surface and the second surface. The first surface of the first substrate is received by the second surface of the second substrate to cover the cavity so as to form a channel for receiving cells and a liquid medium. In forming the bioreactor, the channel is sized to allow the growth of a layer of cells on a biocompatible coating layer and a flow of liquid in the channel. The flow of liquid is controlled so as to provide a known shear force to the layer of cells. The flow of liquid can be further controlled so as to provide an environment that simulates a vascular space in the channel.
    Type: Application
    Filed: March 5, 2009
    Publication date: August 27, 2009
    Applicant: Vanderbilt University
    Inventors: John P. Wikswo, Franz J. Baudenbacher, Ales Prokop, Eugene J. Leboeuf, Chang Y. Chung, David Cliffel, Frederick R. Haselton, William H. Hofmeister, Charles P. Lin, Lisa J. McCawley, Randall S. Reiserer, Mark A. Stremler
  • Publication number: 20070015132
    Abstract: A system and methods for calculating at least one unknown metabolic flux of a plurality of cells. In one embodiment, the method includes the steps of constructing a metabolic network having a plurality of reaction components, the reaction components representing at least glycolysis, reduction of pyruvate to lactate, TCA cycle, and oxidative phosphorylation, measuring at least two metabolic rates of a plurality of cells corresponding to at least two of the metabolic network reactions, and calculating metabolic fluxes of a plurality of cells for the rest of the metabolic network reactions from at least two measured metabolic rates of a plurality of cells corresponding to at least two of the reactions.
    Type: Application
    Filed: August 6, 2002
    Publication date: January 18, 2007
    Inventors: Robert Balcarcel, Lindsey Clark, Yuansheng Yang, Franz Baudenbacher, Owen McGuineness, Ales Prokop
  • Publication number: 20060073539
    Abstract: An apparatus and methods for using biological material to discriminate an agent. In one embodiment of the present invention, the method includes the steps of providing at least one cell, exposing at least one cell to an agent, measuring the response of the cell to the agent in terms of a physical quantity related to at least one of the cellular physiological activities of the cell, and identifying the agent from the measured response. The method further includes the step of quantifying the agent from the measured response.
    Type: Application
    Filed: August 6, 2002
    Publication date: April 6, 2006
    Inventors: John Wikswo, Franz Baudenbacher, R. Balcarcel, Theodore Bapty, David Cliffel, Sven Eklund, Owen McGuinness, Todd Monroe, Ales Prokop, Mark Stremler, Andreas Werdich, Yang Yuansheng
  • Publication number: 20050266090
    Abstract: The present invention provides biocompatible, low molecular weight nanoparticulate formulations that are designed to retain and deliver therapeutics over an extended time course. The therapeutic may be conjugated or adsorbed to the periphery of the corona or conjugated to a core polymer. The nanoparticles comprise targeting ligands also conjugated or adsorbed to the periphery of the corona and/or a contrast agent in the core of the nanoparticle. As such, methods of selective targeting and/or methods of noninvasive imaging using bioluminescence and/or magnetic resonance imaging. Also provided are methods of delivering to and, optionally, imaging of a cell or tissue. Further provided are methods of producing the nanoparticles in batch or continuous mode via simple mixing or laminar flow.
    Type: Application
    Filed: May 10, 2005
    Publication date: December 1, 2005
    Inventors: Ales Prokop, Jeffrey Davidson, Gianluca Carlesso, David Roberts
  • Publication number: 20050158845
    Abstract: An apparatus and methods for measuring response of at least one cell to a medium, the response of at least one cell to a medium being characterized by a reaction time. In one embodiment of the present invention, the device includes a membrane and a side substrate defining a sample well in communication with the ambient air and for receiving the at least one cell such that the membrane is underneath the at least one cell. A sensor is positioned underneath the second surface of the membrane, and an inlet is in fluid communication with the sample well. A medium is introduced into the chamber through the inlet to form a droplet that surrounds the cell, and the sensor measures the response of the cell to the medium at a time period shorter than the reaction time.
    Type: Application
    Filed: August 6, 2002
    Publication date: July 21, 2005
    Inventors: John Wikswo, David Osterman, Franz Baudenbacher, Owen McGuinness, Ales Prokop
  • Publication number: 20050153276
    Abstract: A system and methods for discriminating an agent. In one embodiment of the present invention, the method includes the steps of (a) constructing a decision tree having a plurality of branches, each branch corresponding to at least one defined action, wherein each branch includes a plurality of successive branches, each successive branch corresponding to at least one defined action, (b) providing a conditioned environment sensitive to the agent, (c) obtaining data from response of the agent to the conditioned environment, (d) extracting features from the obtained data, (e) selecting a branch from the decision tree corresponding to the features, (f) performing on the features at least one defined action corresponding to the branch, (g) producing a classification of the agent, and (g) iteratively repeating steps of (d)-(g) until the agent is discriminated.
    Type: Application
    Filed: August 6, 2002
    Publication date: July 14, 2005
    Applicant: Vanderbilt University
    Inventors: John Wikswo, Theodore Bapty, Franz Baudenbacher, Owen McGuinness, Ales Prokop, R. Balcarcel
  • Publication number: 20050008572
    Abstract: The present invention provides a series of biocompatible, nanoparticulate formulations that are designed to retain and deliver peptides such as anti-angiogenic factors over an extended time course. The nanoparticles can be targeted to a cell or tissue by targeting ligands crosslinked or conjugated to the corona of the nanoparticles. In addition to selective targeting, the nanoparticles also may perform noninvasive imaging using bioluminescence and/or magnetic resonance imaging via a contrast agent in the core of the nanoparticle. Also provided are methods of delivering to and, optionally, imaging of a cell or tissue. Furthermore, methods of producing the nanoparticles in batch or continous mode via simple mixing or micromixing.
    Type: Application
    Filed: April 28, 2004
    Publication date: January 13, 2005
    Inventors: Ales Prokop, Jeffrey Davidson, Gianluca Carlesso, David Roberts
  • Publication number: 20040136961
    Abstract: The present invention provides compositions comprising a water-based core solution and a water-based corona solution surrounding the core solution. The compositions comprise polyanionic polymers and salts and polycationic polymers and cations and is useful for adenoviral delivery of a gene or delivery of another drug. The compositions may be nanoparticulate, microcapsular or form a polymeric sheet. Also provided are methods of use for the compositions.
    Type: Application
    Filed: June 30, 2003
    Publication date: July 15, 2004
    Inventors: Ales Prokop, Jeffrey M. Davidson, Gianluca Carlesso, Derya Unutmaz
  • Patent number: 6726934
    Abstract: The present invention provides a method of making particles useful in drug delivery, comprising the steps of: contacting polyanionic polymers with cations in a stirred reactor so that polyanions and the cations react to form particles.
    Type: Grant
    Filed: October 9, 1998
    Date of Patent: April 27, 2004
    Assignee: Vanderbilt University
    Inventor: Ales Prokop
  • Publication number: 20030170313
    Abstract: The present invention provides a method of making particles, e.g., nanoparticles that are stable in a physiological environment for at least a day. The nanoparticles comprise polyanionic polymers and polycations in a complex useful for drug delivery. The method comprises the step of capturing droplets comprising the polyanionic polymers in a solution comprising the polycations; or, alternatively, capturing droplets comprising the polycations in a solution comprising the polyanionic polymers. Also provided are methods of use for the particles.
    Type: Application
    Filed: January 31, 2003
    Publication date: September 11, 2003
    Inventor: Ales Prokop
  • Patent number: 6589563
    Abstract: Microparticles and nanoparticles prepared from oppositely charged polymers are provided in which a drug is incorporated into the core and is conjugated to one polymer by a Schiff-base crosslink. The particles are suitable for use in injectable formulations in which the rate of release of the drug through the particle shell is slowed as compared to noncrosslinked drugs. Enzymatically degradable polymers can be incorporated in otherwise hydrolytically stable particles to provide drug release at particular sites within the body where the enzyme of interest is present.
    Type: Grant
    Filed: September 27, 2002
    Date of Patent: July 8, 2003
    Assignee: Nanodelivery, Inc.
    Inventor: Ales Prokop
  • Publication number: 20030035838
    Abstract: Microparticles and nanoparticles prepared from oppositely charged polymers are provided in which a drug is incorporated into the core and is conjugated to one polymer by a Schiff-base crosslink. The particles are suitable for use in injectable formulations in which the rate of release of the drug through the particle shell is slowed as compared to noncrosslinked drugs. Enzymatically degradable polymers can be incorporated in otherwise hydrolytically stable particles to provide drug release at particular sites within the body where the enzyme of interest is present.
    Type: Application
    Filed: September 27, 2002
    Publication date: February 20, 2003
    Applicant: NanoDelivery, Inc.
    Inventor: Ales Prokop
  • Patent number: 6482439
    Abstract: Microparticles and nanoparticles prepared from oppositely charged polymers are provided in which a drug is incorporated into the core and is conjugated to one polymer by a Schiff-base crosslink. The particles are suitable for use in injectable formulations in which the rate of release of the drug through the particle shell is slowed as compared to noncrosslinked drugs. Enzymatically degradable polymers can be incorporated in otherwise hydrolytically stable particles to provide drug release at particular sites within the body where the enzyme of interest is present.
    Type: Grant
    Filed: December 29, 2000
    Date of Patent: November 19, 2002
    Assignee: Nanodelivery, Inc.
    Inventor: Ales Prokop