Patents by Inventor Andrei Mirzabekov

Andrei Mirzabekov has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20070111215
    Abstract: This invention relates to using customize oligonucleotide microchips as biosensors for the detection and identification of nucleic acids specific for different genes, organisms and/or individuals in the environment, in food and in biological samples. The microchips are designed to convert multiple bits of genetic information into simpler patterns of signals that are interpreted as a unit. Because of an improved method of hybridizing oligonucleotides from samples to microchips, microchips are reusable to transportable. For field study, portable laser or bar code scanners are suitable.
    Type: Application
    Filed: June 10, 2005
    Publication date: May 17, 2007
    Applicant: U Chicago Argonne LLC
    Inventors: Andrei Mirzabekov, Dmitry Guschin, Valentine Chik, Aleksei Drobyshev, Alexander Fotin, Gennadiy Yershov, Yuri Lysov
  • Publication number: 20060178508
    Abstract: A method for fragmenting and labeling nucleic acids is provided. The method comprises maintaining double- and single-stranded nucleic acid molecules in an aerobic or an anaerobic atmosphere, contacting the molecules with hydrogen peroxide and radical generating coordination complexes for a time and at concentrations sufficient to produce aldehyde moieties on the molecules, reacting the aldehyde moieties with amine to produce a condensation product, and labeling the condensation product.
    Type: Application
    Filed: January 23, 2002
    Publication date: August 10, 2006
    Inventors: Sergei Bavykin, Andrei Mirzabekov
  • Publication number: 20060147905
    Abstract: The invention relates to an alternative express-method for specific identification of orthopoxviruses with the aid of microchips by hybridising DNA-DNA. Said method involves a two-stage PCR producing a single stained fluorescently labelled DNA fragment, a hybridisation on a biochip containing an original set of typing oligonucleotides and original procedures for recording and interpreting results.
    Type: Application
    Filed: November 26, 2001
    Publication date: July 6, 2006
    Inventors: Andrei Mirzabekov, Natalia Mirzabekova, Lev Sandakhchiev, Vladimir Mikhailovich, Sergei Lapa, Maxim Mikheev, Sergei Schelkunov
  • Patent number: 6818398
    Abstract: A method for manipulating genetic material, the method comprising disrupting cells so as to liberate genetic material contained in the cells; contacting the genetic material to a silica column in a manner to cause the genetic material to become immobilized to the column; labeling the immobilized genetic material; and eluting the labeled material from the column. Also provided is a two-buffer process for manipulating genetic material, the process comprising: contacting cells containing the genetic material to a silica column; creating a first fraction of cell detritus and a second fraction containing the genetic material; confining the genetic material to the column; removing the cell detritus; contacting the genetic material with radicals so as to produce reactive aldehyde groups on the genetic material, and attaching chromophore to the genetic material.
    Type: Grant
    Filed: December 29, 2000
    Date of Patent: November 16, 2004
    Assignee: The University of Chicago
    Inventors: Sergei G. Bavykin, James P. Akowski, Vladimir M. Zakhariev, Andrei Mirzabekov
  • Patent number: 6656725
    Abstract: A method for making polymerized molecules is provided whereby a solution containing monomer is contacted to a solid substrate so as to form discrete accumulations of the monomer on the substrate; and the accumulations are contacted with a polymerizing agent, wherein the agent is dispersed in a vehicle which prevents cross contamination of the accumulations.
    Type: Grant
    Filed: August 15, 2001
    Date of Patent: December 2, 2003
    Assignee: The University of Chicago
    Inventors: Andrei Mirzabekov, Edouard Timofeev, Vadim Vasiliskov
  • Patent number: 6642000
    Abstract: The invention relates two general methods for performing PCR amplification, combined with the detection and analysis of the PCR products on a microchip. In the first method, the amplification occurs both outside and within a plurality of gel pads on a microchip, with at least one oligonucleotide primer immobilized in a gel pad. In the second method, PCR amplification also takes place within gel pads on a microchip, but the pads are surrounded by a hydrophobic liquid such as that which separates the individual gel pads into environments which resemble micro-miniaturized test tubes.
    Type: Grant
    Filed: April 25, 2000
    Date of Patent: November 4, 2003
    Assignee: University of Chicago
    Inventors: Boris Strizhkov, Sergei Tillib, Vladimir Mikhailovich, Andrei Mirzabekov
  • Publication number: 20030157509
    Abstract: This invention relates to using customized oligonucleotide microchips as biosensors for the detection and identification of nucleic acids specific for different genes, organisms and/or individuals in the environment, in food and in biological samples. The microchips are designed to convert multiple bits of genetic information into simpler patterns of signals that are interpreted as a unit. Because of an improved method of hybridizing oligonucleotides from samples to microchips, microchips are reusable and transportable. For field study, portable laser or bar code scanners are suitable.
    Type: Application
    Filed: August 5, 2002
    Publication date: August 21, 2003
    Inventors: Andrei Mirzabekov, Dmitry Y. Guschin, Valentine Chik, Aleksei Drobyshev, Alexander Fotin, Gennadiy Yershov, Yuri Lysov
  • Publication number: 20030096229
    Abstract: A method for manipulating genetic material, the method comprising disrupting cells so as to liberate genetic material contained in the cells; contacting the genetic material to a silica column in a manner to cause the genetic material to become immobilized to the column; labeling the immobilized genetic material; and eluting the labeled material from the column. Also provided is a two-buffer process for manipulating genetic material, the process comprising: contacting cells containing the genetic material to a silica column; creating a first fraction of cell detritus and a second fraction containing the genetic material; confining the genetic material to the column; removing the cell detritus; contacting the genetic material with radicals so as to produce reactive aldehyde groups on the genetic material, and attaching chromophore to the genetic material.
    Type: Application
    Filed: December 29, 2000
    Publication date: May 22, 2003
    Inventors: Sergei G. Bavykin, James P. Akowski, Vladimir M. Zakhariev, Andrei Mirzabekov
  • Publication number: 20030073091
    Abstract: Nucleic acids or proteins immobilized in a gel pad are interacting with a protein and the nucleic acid-protein and protein-protein interactions are characterized and measured. Large-scale, parallel measurements of these interactions can be examined to provide a powerful tool in elucidating interactions between proteins and nucleic acids.
    Type: Application
    Filed: December 27, 2001
    Publication date: April 17, 2003
    Applicant: The University of Chicago
    Inventors: Alexander S. Krylov, Andrei Mirzabekov, Dmitry V. Prokopenko, Olga A. Zasedateleva
  • Publication number: 20030036063
    Abstract: A method for making polymerized molecules is provided whereby a solution containing monomer is contacted to a solid substrate so as to form discrete accumulations of the monomer on the substrate; and the accumulations are contacted with a polymerizing agent, wherein the agent is dispersed in a vehicle which prevents cross contamination of the accumulations.
    Type: Application
    Filed: August 15, 2001
    Publication date: February 20, 2003
    Inventors: Andrei Mirzabekov, Edward Timofeev, Vladim Vasiliskov
  • Patent number: 6458584
    Abstract: This invention relates to using customized oligonucleotide microchips as biosensors for the detection and identification of nucleic acids specific for different genes, organisms and/or individuals in the environment, in food and in biological samples. The microchips are designed to convert multiple bits of genetic information into simpler patterns of signals that are interpreted as a unit. Because of an improved method of hybridizing oligonucleotides from samples to microchips, microchips are reusable and transportable. For field study, portable laser or bar code scanners are suitable.
    Type: Grant
    Filed: March 3, 1999
    Date of Patent: October 1, 2002
    Assignee: University of Chicago
    Inventors: Andrei Mirzabekov, Dmitry Y. Guschin, Valentine Chik, Aleksei Drobyshev, Alexander Fotin, Gennadiy Yershov, Yuri Lysov
  • Patent number: 5919523
    Abstract: Methods and derivatized supports which are useful in solid-phase synthesis of peptides, oligonucleotides or other small organic molecules as well as arrays of ligands. The methods provide means to control the functional site density on a solid support. Some of the derivatized supports are polymer-coated or glycan-coated. Other methods for regenerating the surface of a used ligand array are also provided.
    Type: Grant
    Filed: October 24, 1997
    Date of Patent: July 6, 1999
    Assignee: Affymetrix, Inc.
    Inventors: Steven A. Sundberg, Jeffrey W. Jacobs, John R. Schullek, Glenn H. McGall, Andrei Mirzabekov, Edward Timofeey, David Fujimoto, Christopher P. Holmes, Hua Yang