Patents by Inventor Anindita BASU

Anindita BASU has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11904310
    Abstract: The present invention generally relates to a controlled fluidic device to develop spatially complex environments to enhance the rate of evolution in cell populations. The method further provides an enhanced understanding in the emergence, for example, drug resistance during cancer chemotherapy.
    Type: Grant
    Filed: October 28, 2016
    Date of Patent: February 20, 2024
    Assignees: The Broad Institute, Inc., Massachusetts Institute of Technology, President and Fellows of Harvard College, Dana-Farber Cancer Institute, Inc.
    Inventors: Anindita Basu, Christopher B. Ford, Aviv Regev, David A. Weitz, Asaf Rotem, Kevin Struhl
  • Publication number: 20230407235
    Abstract: A system and method for mechanical processing of cells includes using a frame (102) forming an inlet channel (104), an outlet channel (106), and a processing chamber (108) fluidly connected between the inlet and outlet channels, wherein the processing chamber includes an anvil surface (112) formed on the frame. A hammer (110) mounted on the frame has a processing surface disposed in opposed relation to the anvil surface. The hammer is configured to move relative to the anvil surface. An actuator connected to the frame and operably associated with the hammer operates to move the hammer relative to the anvil surface and in close proximity to the anvil surface, wherein the hammer operates between a retracted position in which the processing surface is at a distance from the anvil surface, and an extended position in which the processing surface abuts the anvil surface.
    Type: Application
    Filed: November 9, 2021
    Publication date: December 21, 2023
    Applicants: The University of Chicago, UChicago Argonne, LLC
    Inventors: Anindita BASU, Abhiteja KONDA, Pavani Vamsi Krishna NITTALA, Supratik GUHA
  • Patent number: 11597964
    Abstract: The present invention generally relates to a combination of molecular barcoding and emulsion-based microfluidics to isolate, lyse, barcode, and prepare nucleic acids from individual cells in a high-throughput manner.
    Type: Grant
    Filed: March 8, 2017
    Date of Patent: March 7, 2023
    Assignees: The Broad Institute, Inc., Massachusetts Institute of Technology, President and Fellows of Harvard College
    Inventors: Aviv Regev, Evan Zane Macosko, Steven Andrew McCarroll, Alexander K. Shalek, Anindita Basu, Christopher B. Ford, Hongkun Park, David A. Weitz
  • Patent number: 11566279
    Abstract: The present invention generally relates to a combination of molecular barcoding and emulsion-based microfluidics to isolate, lyse, barcode, and prepare nucleic acids from individual cells in a high-throughput manner.
    Type: Grant
    Filed: January 9, 2019
    Date of Patent: January 31, 2023
    Assignees: The Broad Institute, Inc., Massachusetts Institute of Technology, President and Fellows of Harvard College
    Inventors: Aviv Regev, Evan Zane Macosko, Steven Andrew McCarroll, Alexander K. Shalek, Anindita Basu, Christopher B. Ford, Hongkun Park, David A. Weitz
  • Patent number: 11436945
    Abstract: The present disclosure includes millifluidic cephalic arch (mCA) device having a patient-specific vessel that includes an outer surface; an inner surface that defines a vessel lumen extending through the patient-specific vessel and configured to correspond to a patient's Cephalic vein, and a curved section.
    Type: Grant
    Filed: August 21, 2020
    Date of Patent: September 6, 2022
    Assignee: THE UNIVERSITY OF CHICAGO
    Inventors: Anindita Basu, Mary Hammes, Andres Moya-Rodriguez
  • Publication number: 20210395821
    Abstract: Techniques Nuc-seq, Div-Seq, and Dronc-Seq are allow for unbiased analysis of any complex tissue. Nuc-Seq, a scalable single nucleus RNA-Seq method, can sensitively identify closely related cell types, including within the adult hippocampus. Div-seq combines Nuc-Seq with EdU-mediated labeling of proliferating cells, allowing tracking of transcriptional dynamics of newborn neurons in an adult neurogenic region in the hippocampus. Dronc-Seq uses a microfluidic device to co-encapsulate individual nuclei in reverse emulsion aqueous droplets in an oil medium together with one uniquely barcoded mRNA-capture bead.
    Type: Application
    Filed: November 13, 2018
    Publication date: December 23, 2021
    Inventors: Naomi Habib, Aviv Regev, Eugene Drokhlyansky, Anindita Basu, Inbal Avraham-Davidi, Orit Rozenblatt-Rosen, David A. Weitz
  • Publication number: 20210056867
    Abstract: The present disclosure includes millifluidic cephalic arch (mCA) device having a patient-specific vessel that includes an outer surface; an inner surface that defines a vessel lumen extending through the patient-specific vessel and configured to correspond to a patient's Cephalic vein, and a curved section.
    Type: Application
    Filed: August 21, 2020
    Publication date: February 25, 2021
    Inventors: Anindita BASU, Mary HAMMES, Andres MOYA-RODRIGUEZ
  • Publication number: 20190218276
    Abstract: Transcriptomes of individual neurons provide rich information about cell types and dynamic states. However, it is difficult to capture rare dynamic processes, such as adult neurogenesis, because isolation from dense adult tissue is challenging, and markers for each phase are limited. Here, Applicants developed Nuc-seq, Div-Seq, and Dronc-Seq. Div-seq combines Nuc-Seq, a scalable single nucleus RNA-Seq method, with EdU-mediated labeling of proliferating cells. Nuc-Seq can sensitively identify closely related cell types within the adult hippocampus. Div-Seq can track transcriptional dynamics of newborn neurons in an adult neurogenic region in the hippocampus. Dronc-Seq uses a microfluidic device to co-encapsulate individual nuclei in reverse emulsion aqueous droplets in an oil medium together with one uniquely barcoded mRNA-capture bead. Finally, Applicants found rare adult newborn GABAergic neurons in the spinal cord, a non-canonical neurogenic region.
    Type: Application
    Filed: October 27, 2016
    Publication date: July 18, 2019
    Applicants: THE BROAD INSTITUTE, INC., MASSACHUSETTS INSTITUTE OF TECHNOLOGY, PRESIDENT AND FELLOWS OF HARVARD COLLEGE
    Inventors: Aviv Regev, Feng Zhang, Naomi Habib, Yinqing Li, Matthias Heidenreich, Lukasz Swiech, Anindita Basu, David Weitz, Inbal Avraham Davidi
  • Publication number: 20190127782
    Abstract: The present invention generally relates to a combination of molecular barcoding and emulsion-based microfluidics to isolate, lyse, barcode, and prepare nucleic acids from individual cells in a high-throughput manner.
    Type: Application
    Filed: January 9, 2019
    Publication date: May 2, 2019
    Inventors: Aviv REGEV, Evan Zane MACOSKO, Steven Andrew MCCARROLL, Alexander K. SHALEK, Anindita BASU, Christopher B. FORD, Hongkun PARK, David A. WEITZ
  • Publication number: 20180311669
    Abstract: The present invention generally relates to a controlled fluidic device to develop spatially complex environments to enhance the rate of evolution in cell populations. The method further provides an enhanced understanding in the emergence, for example, drug resistance during cancer chemotherapy.
    Type: Application
    Filed: October 28, 2016
    Publication date: November 1, 2018
    Applicants: THE BROAD INSTITUTE, INC., MASSACHUSETTS INSTITUTE OF TECHNOLOGY, PRESIDENT AND FELLOWS OF HARVARD COLLEGE, DANA-FARBER CANCER INSTITUTE, INC.
    Inventors: Anindita BASU, Christopher B. FORD, Aviv REGEV, David A. WEITZ, Asaf ROTEM, Kevin STRUHL
  • Publication number: 20180030515
    Abstract: The present invention generally relates to a combination of molecular barcoding and emulsion-based microfluidics to isolate, lyse, barcode, and prepare nucleic acids from individual cells in a high-throughput manner.
    Type: Application
    Filed: March 8, 2017
    Publication date: February 1, 2018
    Inventors: Aviv Regev, Evan Zane MACOSKO, Steven Andrew MCCARROLL, Alexander K. SHALEK, Anindita BASU, Christopher B. FORD, Hongkun PARK, David A. WEITZ