Patents by Inventor Anthony D. Barone

Anthony D. Barone has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20150252351
    Abstract: The present invention provides methods, compositions, and kits for storing and enhancing the activity of polymerases and particularly thermostable polymerases. The methods comprise mixing a thermostable polymerase with at least one zwitterionic or ylide surfactant that has at least one PEO group. In another aspect the polymerase is mixed with a blocker such as PLURONIC® or TETRONIC® or an amine N-oxide derivative thereof. The thermostable polymerase may be reversibly inactivated by treatment with 2-(Methylsulfonyl)ethyl 4-nitrophenyl carbonate. Compositions and kits for performing the process according to the invention are also provided.
    Type: Application
    Filed: May 20, 2015
    Publication date: September 10, 2015
    Inventors: Glenn H. McGall, Anthony D. Barone, Christopher J. Kubu
  • Patent number: 9085761
    Abstract: The present invention provides methods, compositions, and kits for storing and enhancing the activity of polymerases and particularly thermostable polymerases. The methods comprise mixing a thermostable polymerase with at least one zwitterionic or ylide surfactant that has at least one PEO group. In another aspect the polymerase is mixed with a blocker such as PLURONIC® or TETRONIC® or an amine N-oxide derivative thereof. The thermostable polymerase may be reversibly inactivated by treatment with 2-(Methylsulfonyl)ethyl 4-nitrophenyl carbonate. Compositions and kits for performing the process according to the invention are also provided.
    Type: Grant
    Filed: March 8, 2013
    Date of Patent: July 21, 2015
    Assignee: AFFYMETRIX, INC.
    Inventors: Glenn H. McGall, Anthony D. Barone, Christopher J. Kubu
  • Publication number: 20150159198
    Abstract: The present invention provides methods, compositions, and kits for storing and enhancing the activity of polymerases and particularly thermostable polymerases. The methods comprise mixing a thermostable polymerase with at least one zwitterionic or ylide surfactant that has at least one PEO group. In another aspect the polymerase is mixed with a blocker such as PLURONIC® or TETRONIC® or an amine N-oxide derivative thereof. The thermostable polymerase may be reversibly inactivated by treatment with 2-(Methylsulfonyl)ethyl 4-nitrophenyl carbonate. Compositions and kits for performing the process according to the invention are also provided.
    Type: Application
    Filed: February 18, 2015
    Publication date: June 11, 2015
    Inventors: Glenn H. McGall, Anthony D. Barone, Christopher J. Kubu
  • Patent number: 8497064
    Abstract: Nucleic acid labeling compounds are disclosed. The compounds are synthesized by condensing a heterocyclic derivative with a cyclic group (e.g. a ribofuranose derivative). The labeling compounds are suitable for enzymatic attachment to a nucleic acid, either terminally or internally, to provide a mechanism of nucleic acid detection.
    Type: Grant
    Filed: November 1, 2011
    Date of Patent: July 30, 2013
    Assignee: Affymetrix, Inc.
    Inventors: Glenn H. McGall, Anthony D. Barone
  • Publication number: 20120053336
    Abstract: Nucleic acid labeling compounds are disclosed. The compounds are synthesized by condensing a heterocyclic derivative with a cyclic group (e.g. a ribofuranose derivative). The labeling compounds are suitable for enzymatic attachment to a nucleic acid, either terminally or internally, to provide a mechanism of nucleic acid detection.
    Type: Application
    Filed: November 1, 2011
    Publication date: March 1, 2012
    Applicant: AFFYMETRIX, INC.
    Inventors: Glenn McGall, Anthony D. Barone
  • Patent number: 8076072
    Abstract: Nucleic acid labeling compounds including the following are disclosed: These compounds are useful for attaching a detectable label to a nucleic acid.
    Type: Grant
    Filed: September 28, 2010
    Date of Patent: December 13, 2011
    Assignee: Affymetrix, Inc.
    Inventors: Glenn Hugh McGall, Anthony D. Barone
  • Publication number: 20110143967
    Abstract: Novel processes are disclosed for forming an array of polymers by functionalizing the surface of particles by methods that include covalently attaching a functionalized silicon compound. Substrates such as microparticles having functionalized silicon compounds attached thereto are produced by introducing at least one carboxyl group directly by silanating a carboxylated silane compound to the surface of a microparticle. In a further aspect of the invention, the silane compound is a dipodal carboxylated silane.
    Type: Application
    Filed: December 14, 2010
    Publication date: June 16, 2011
    Inventors: Glenn H. McGALL, Anthony D. BARONE, Randall J. TRUE
  • Publication number: 20110143966
    Abstract: Novel processes are disclosed for forming an array of polymers by functionalizing the surface of particles by methods that include covalently attaching a functionalized silicon compound. Substrates such as microparticles having functionalized silicon compounds attached thereto are produced by introducing at least one carboxyl group directly by silanating a carboxylated silane compound to the surface of a microparticle. In a further aspect of the invention, the silane compound is a dipodal carboxylated silane.
    Type: Application
    Filed: August 2, 2010
    Publication date: June 16, 2011
    Applicant: Affymetrix, INC.
    Inventors: Glenn H. McGall, Anthony D. Barone
  • Publication number: 20110082289
    Abstract: Nucleic acid labeling compounds are disclosed. The compounds are synthesized by condensing a heterocyclic derivative with a cyclic group (e.g. a ribofuranose derivative). The labeling compounds are suitable for enzymatic attachment to a nucleic acid, either terminally or internally, to provide a mechanism of nucleic acid detection.
    Type: Application
    Filed: September 28, 2010
    Publication date: April 7, 2011
    Applicant: Affymetric, INC.
    Inventors: Glenn McGall, Anthony D. Barone
  • Publication number: 20110028350
    Abstract: Novel compounds are provided, which are useful as linking groups in chemical synthesis, preferably in the solid phase synthesis of oligonucleotides and polypeptides. These compounds are generally photolabile and comprise protecting groups which can be removed by photolysis to unmask a reactive group. The protecting group has the general formula Y, wherein Y is a chemical structure as shown in FIG. 5. Also provided is a method of forming, from component molecules, a plurality of compounds on a support, each compound occupying a separate predefined region of the support, using the protected compounds described above.
    Type: Application
    Filed: July 28, 2009
    Publication date: February 3, 2011
    Applicant: Affymetrix, INC.
    Inventors: Glenn H. McGall, Anthony D. Barone
  • Publication number: 20100324266
    Abstract: Novel compounds are provided, which are useful as linking groups in chemical synthesis, preferably in the solid phase synthesis of oligonucleotides and polypeptides. These compounds are generally photolabile and comprise protecting groups which can be removed by photolysis to unmask a reactive group. The protecting group has the general formula Y, wherein Y is a chemical structure as shown in FIG. 1. Also provided is a method of forming, from component molecules, a plurality of compounds on a support, each compound occupying a separate predefined region of the support, using the protected compounds described above.
    Type: Application
    Filed: June 9, 2010
    Publication date: December 23, 2010
    Applicant: Affymetrix, INC.
    Inventors: Anthony D. Barone, Glenn H. McGall
  • Patent number: 7824863
    Abstract: In one aspect of the invention, a method is provided for end-labeling RNA (total RNA, mRNA, cRNA or fragmented RNA). In one aspect of the present invention, T4 RNA ligase is used to attach a 3?-labeled AMP or CMP donor to an RNA acceptor molecule. In another embodiment, a pyrophosphate molecule 3?-AppN-3?-linker-detectable moiety is used as donor molecule.
    Type: Grant
    Filed: October 22, 2008
    Date of Patent: November 2, 2010
    Assignee: Affymetrix, Inc.
    Inventors: Kyle B. Cole, Vivi Truong, Glenn H. McGall, Anthony D. Barone
  • Publication number: 20090076295
    Abstract: Novel compounds are provided, which are useful as linking groups in chemical synthesis, preferably in the solid phase synthesis of oligonucleotides and polypeptides. These compounds are generally photolabile and comprise protecting groups which can be removed by photolysis to unmask a reactive group. The protecting group has the general formula Y, wherein Y is a chemical structure as shown in FIG. 1. Also provided is a method of forming, from component molecules, a plurality of compounds on a support, each compound occupying a separate predefined region of the support, using the protected compounds described above.
    Type: Application
    Filed: September 19, 2008
    Publication date: March 19, 2009
    Applicant: Affymetrix, INC.
    Inventors: Anthony D. Barone, Glenn H. McGall
  • Patent number: 7504215
    Abstract: In one aspect of the invention, a method is provided for end-labeling RNA (total RNA, mRNA, cRNA or fragmented RNA). In one aspect of the present invention, T4 RNA ligase is used to attach a 3?-labeled AMP or CMP donor to an RNA acceptor molecule. In another embodiment, a pyrophosphate molecule 3?-AppN-3?-linker-detectable moiety is used as donor molecule.
    Type: Grant
    Filed: November 4, 2004
    Date of Patent: March 17, 2009
    Assignee: Affymetrix, Inc.
    Inventors: Kyle B. Cole, Vivi Truong, Glenn H. McGall, Anthony D. Barone
  • Publication number: 20090054258
    Abstract: In one aspect of the invention, a method is provided for end-labeling RNA (total RNA, mRNA, cRNA or fragmented RNA). In one aspect of the present invention, T4 RNA ligase is used to attach a 3?-labeled AMP or CMP donor to an RNA acceptor molecule. In another embodiment, a pyrophosphate molecule 3?-AppN-3?-linker-detectable moiety is used as donor molecule.
    Type: Application
    Filed: October 22, 2008
    Publication date: February 26, 2009
    Applicant: Affymetrix, Inc
    Inventors: Kyle B. Cole, Vivi Truong, Glenn H. McGall, Anthony D. Barone
  • Patent number: 7491818
    Abstract: Nucleic acid labeling compounds containing heterocyclic derivatives are disclosed. The heterocyclic derivative containing compounds are synthesized by condensing a heterocyclic derivative with a cyclic group (e.g. a ribofuranose derivative). The labeling compounds are suitable for enzymatic attachment to a nucleic acid, either terminally or internally, to provide a mechanism of nucleic acid detection.
    Type: Grant
    Filed: January 18, 2005
    Date of Patent: February 17, 2009
    Assignee: Affymetrix, Inc.
    Inventors: Glenn McGall, Anthony D. Barone
  • Patent number: 7468243
    Abstract: Nucleic acid labeling compounds are disclosed having the formula: These compounds are useful for attaching a detectable label to a nucleic acid.
    Type: Grant
    Filed: March 12, 2002
    Date of Patent: December 23, 2008
    Assignee: Affymetrix, Inc.
    Inventors: Glenn McGall, Anthony D. Barone
  • Publication number: 20080287667
    Abstract: Nucleic acid labeling compounds are disclosed. The compounds are synthesized by condensing a heterocyclic derivative with a cyclic group (e.g. a ribofaranose derivative). The labeling compounds are suitable for enzymatic attachment to a nucleic acid, either terminally or internally, to provide a mechanism of nucleic acid detection.
    Type: Application
    Filed: June 27, 2008
    Publication date: November 20, 2008
    Applicant: Affymetrix, INC.
    Inventors: Glenn McGall, Anthony D. Barone
  • Patent number: 7423143
    Abstract: Nucleic acid labeling compounds containing heterocyclic derivatives are disclosed. The heterocyclic derivative containing compounds are synthesized by condensing a heterocyclic derivative with a cyclic group (e.g. a ribofuranose derivative). The labeling compounds are suitable for enzymatic attachment to a nucleic acid, either terminally or internally, to provide a mechanism of nucleic acid detection.
    Type: Grant
    Filed: May 10, 2005
    Date of Patent: September 9, 2008
    Assignee: Affymetrix. Inc.
    Inventors: Glenn H. McGall, Anthony D. Barone
  • Patent number: 7291463
    Abstract: A method for converting a pseudoisocytidine base having the formula: to a pseudoisocytidine molecule having the formula: is disclosed. Such compounds are useful as nucleic acid labeling compounds.
    Type: Grant
    Filed: December 23, 2003
    Date of Patent: November 6, 2007
    Assignee: Affymetrix, Inc.
    Inventors: Glenn H. McGall, Anthony D. Barone, Handong Li