Patents by Inventor Aoune Barhoumi

Aoune Barhoumi has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11959838
    Abstract: The disclosure generally relates to the preparation of representative samples from clinical samples, e.g., tumors (whole or in part), lymph nodes, metastases, cysts, polyps, or a combination or portion thereof, using mechanical and/or biochemical dissociation methods to homogenize intact samples or large portions thereof. The resulting homogenate provides the ability to obtain a correct representative sample despite spatial heterogeneity within the sample, increasing detection likelihood of low prevalence subclones, and is suitable for use in various diagnostic assays as well as the production of therapeutics, especially “personalized” anti-tumor vaccines or immune cell based therapies.
    Type: Grant
    Filed: April 27, 2018
    Date of Patent: April 16, 2024
    Assignee: Ventana Medical Systems, Inc.
    Inventors: Nelson Alexander, Aoune Barhoumi, Melinda Day, Lisa Gallegos, Katherine Leith, Samantha Rajkovich, Esteban Roberts, Stacey Stanislaw, Eric Walk
  • Publication number: 20240077391
    Abstract: The present disclosure provides a method of separating cellular particles from a tissue sample and then sorting the cellular particles into two or more cellular particle populations.
    Type: Application
    Filed: August 11, 2023
    Publication date: March 7, 2024
    Inventors: Nelson Alexander, Aoune Barhoumi, Lisa Gallegos, Stacey Stanislaw
  • Patent number: 11768137
    Abstract: The present disclosure provides a method of separating cellular particles from a tissue sample and then sorting the cellular particles into two or more cellular particle populations.
    Type: Grant
    Filed: September 16, 2019
    Date of Patent: September 26, 2023
    Assignee: VENTANA MEDICAL SYSTEMS, INC.
    Inventors: Nelson Alexander, Aoune Barhoumi, Lisa Gallegos, Stacey Stanislaw
  • Publication number: 20230174585
    Abstract: The present disclosure is directed to conjugates of a specific binding entity and an oligomer, i.e. [Specific Binding Entity]-[Oligomer]n, wherein n is an integer ranging from 1 to 12, and where the Oligomer includes, in some embodiments, a PNA sequence having at least one substituent at a gamma carbon position. In some embodiments, the substituent at the gamma carbon position, e.g. an amino acid, a peptide, a miniPEG, or a polymer, includes at least one reporter moiety.
    Type: Application
    Filed: January 30, 2023
    Publication date: June 8, 2023
    Inventors: Rui Hong, Aoune Barhoumi
  • Publication number: 20230151361
    Abstract: The disclosure is directed to conjugates, e.g. PNA conjugates, as well as methods of employing the conjugates for detecting one or more targets in a biological sample, e.g. a tissue sample.
    Type: Application
    Filed: October 17, 2022
    Publication date: May 18, 2023
    Inventors: Aoune Barhoumi, Rui Hong
  • Patent number: 11603565
    Abstract: The invention is a method of identifying a cognate antigen for a T-cell receptor using neoantigens from a patient's tumor cells combined with the patient's T-cells and using cell sorting, genome sequencing, expressing TCR genes, presenting tumor neoantigens on MHC complex and uniquely barcoding the T-cells where TCR recognition occurs to tag all components of the TCR recognition complex.
    Type: Grant
    Filed: June 14, 2019
    Date of Patent: March 14, 2023
    Assignees: ROCHE SEQUENCING SOLUTIONS, INC., VENTANA MEDICAL SYSTEMS, INC.
    Inventors: Nelson R. Alexander, Aoune Barhoumi, Jan Berka, Rui Chen, Lisa L. Gallegos, Toumy Guettouche, Seoyoung Kim, Maeve E. O'Huallachain, Sedide Ozturk, Jigar Patel, Florian Rubelt, Stacey Stanislaw
  • Patent number: 11603388
    Abstract: The present disclosure is directed to conjugates of a specific binding entity and an oligomer, i.e. [Specific Binding Entity]-[Oligomer]n, wherein n is an integer ranging from 1 to 12, and where the Oligomer includes, in some embodiments, a PNA sequence having at least one substituent at a gamma carbon position. In some embodiments, the substituent at the gamma carbon position, e.g. an amino acid, a peptide, a miniPEG, or a polymer, includes at least one reporter moiety.
    Type: Grant
    Filed: June 1, 2020
    Date of Patent: March 14, 2023
    Assignee: Ventana Medical Systems, Inc.
    Inventors: Rui Hong, Aoune Barhoumi
  • Patent number: 11597925
    Abstract: The disclosure is directed to conjugates, e.g. PNA conjugates, as well as methods of employing the conjugates for detecting one or more targets in a biological sample, e.g. a tissue sample.
    Type: Grant
    Filed: June 11, 2019
    Date of Patent: March 7, 2023
    Assignee: Ventana Medical Systems, Inc.
    Inventors: Aoune Barhoumi, Rui Hong
  • Publication number: 20210285049
    Abstract: The invention is a method of identifying a cognate antigen for a T-cell receptor using neoantigens from a patient's tumor cells combined with the patient's T-cells and using cell sorting, genome sequencing, expressing TCR genes, presenting tumor neoantigens on MHC complex and uniquely barcoding the T-cells where TCR recognition occurs to tag all components of the TCR recognition complex.
    Type: Application
    Filed: June 14, 2019
    Publication date: September 16, 2021
    Inventors: Nelson R. Alexander, Aoune Barhoumi, Jan Berka, Rui Chen, Lisa L. Gallegos, Toumy Guettouche, Seoyoung Kim, Maeve E. O'Huallachain, Sedide Ozturk, Jigar Patel, Florian Rubelt, Stacey Stanislaw
  • Publication number: 20210270837
    Abstract: Disclosed herein is a method of analyzing flow cytometry data for cells derived from homogenized whole tumor samples.
    Type: Application
    Filed: March 17, 2021
    Publication date: September 2, 2021
    Inventors: Nelson R. Alexander, Aoune Barhoumi, Lisa L. Gallegos
  • Publication number: 20200339633
    Abstract: The present disclosure is directed to conjugates of a specific binding entity and an oligomer, i.e. [Specific Binding Entity]-[Oligomer]n, wherein n is an integer ranging from 1 to 12, and where the Oligomer includes, in some embodiments, a PNA sequence having at least one substituent at a gamma carbon position. In some embodiments, the substituent at the gamma carbon position, e.g. an amino acid, a peptide, a miniPEG, or a polymer, includes at least one reporter moiety.
    Type: Application
    Filed: June 1, 2020
    Publication date: October 29, 2020
    Inventors: Rui Hong, Aoune Barhoumi
  • Publication number: 20200095577
    Abstract: The disclosure is directed to conjugates, e.g. PNA conjugates, as well as methods of employing the conjugates for detecting one or more targets in a biological sample, e.g. a tissue sample.
    Type: Application
    Filed: June 11, 2019
    Publication date: March 26, 2020
    Inventors: Aoune Barhoumi, Rui Hong
  • Publication number: 20200049599
    Abstract: The disclosure generally relates to the preparation of representative samples from clinical samples, e.g., tumors (whole or in part), lymph nodes, metastases, cysts, polyps, or a combination or portion thereof, using mechanical and/or biochemical dissociation methods to homogenize intact samples or large portions thereof. The resulting homogenate provides the ability to obtain a correct representative sample despite spatial heterogeneity within the sample, increasing detection likelihood of low prevalence subclones, and is suitable for use in various diagnostic assays as well as the production of therapeutics, especially “personalized” anti-tumor vaccines or immune cell based therapies.
    Type: Application
    Filed: April 27, 2018
    Publication date: February 13, 2020
    Inventors: Nelson Alexander, Aoune Barhoumi, Melinda Day, Lisa Gallegos, Katherine Leith, Samantha Rajkovich, Esteban Roberts, Stacey Stanislaw, Eric Walk
  • Publication number: 20200011775
    Abstract: The present disclosure provides a method of separating cellular particles from a tissue sample and then sorting the cellular particles into two or more cellular particle populations.
    Type: Application
    Filed: September 16, 2019
    Publication date: January 9, 2020
    Inventors: Nelson Alexander, Aoune Barhoumi, Lisa Gallegos, Stacey Stanislaw
  • Patent number: 9168389
    Abstract: Systems and methods for the activation of species and/or the delivery of species to a target environment using harmonic generation materials are generally described.
    Type: Grant
    Filed: February 20, 2013
    Date of Patent: October 27, 2015
    Assignees: Massachusetts Institute of Technology, Children's Medical Center Corporation
    Inventors: Robert S. Langer, Daniel S. Kohane, Aoune Barhoumi
  • Publication number: 20140234938
    Abstract: Systems and methods for the activation of species and/or the delivery of species to a target environment using harmonic generation materials are generally described.
    Type: Application
    Filed: February 20, 2013
    Publication date: August 21, 2014
    Applicants: Children's Medical Center Corporation, Massachusetts Institute of Technology
    Inventors: Robert S. Langer, Daniel S. Kohane, Aoune Barhoumi
  • Publication number: 20120178181
    Abstract: A device and method for detecting the hybridization of an unmodified target deoxyribonucleic acid (DNA) molecule including exposing a Raman substrate to the unmodified target DNA molecule, where the unmodified target DNA molecule is a complementary DNA molecule to a thiol-terminated probe DNA molecule covalently linked to the Raman substrate. Also, the thiol-terminated probe DNA molecule includes an adenine analog substituted for adenine. The hybridization of the unmodified target DNA molecule to the thiol-terminated probe DNA molecule is detected by measuring a Raman spectroscopic response of the Raman substrate.
    Type: Application
    Filed: August 16, 2010
    Publication date: July 12, 2012
    Applicant: William March Rice University
    Inventors: Aoune Barhoumi, Dongmao Zhang, Nancy J. Halas
  • Publication number: 20100040549
    Abstract: Disclosed herein are novel targeted drug delivery and controlled release methods and compositions where optically absorbing nanoparticles, such as nanoshells, are functionalized on their surfaces with thermolabile molecules that bind the drug molecules to be delivered. The linkage between the thermolabile moiety on the nanoparticles and the drug is deliberately designed or selected to be temperature sensitive, so that upon illumination of the nanoparticle at a wavelength of light, the drug molecules on the nanoparticles will be released. Targeting molecules, such as antibodies, aptamers or other molecules like folic acid, can be concurrently bound to the nanoparticle surface to deliver the nanoparticle to specifically targeted cells or tissues prior to the photothermally induced drug release. In this way the nanoparticles can be advantageously concentrated on the target prior to illumination, which makes the disclosed compositions both a targeted delivery and a controllable drug release vehicle.
    Type: Application
    Filed: January 4, 2008
    Publication date: February 18, 2010
    Applicant: WILLIAM MARSH RICE UNIVERSITY
    Inventors: Nancy J. Halas, Dongmao Zhang, Aoune Barhoumi