Patents by Inventor Arghya Deb

Arghya Deb has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20250206704
    Abstract: Engineered ionophores capable of increased metal ion transport across hydrophobic membranes and/or reduced metal ion binding affinity, pharmaceutical compositions thereof, kits thereof, ion-selective membrane devices thereof, and methods of use thereof. Hydrophobic membranes can be biological, e.g., cell membranes, or nonbiological, e.g., ion-selective membranes. Engineered ionophores can comprise a metal ion chelator group comprising: a polar binding site having binding atoms to form a metal ion chelate complex; and one or more shielding group(s) in proximity to the binding atoms. Shielding groups can increase the hydrophobic membrane permeability and reduce the binding affinity of the chelate complex. Methods of use can comprise contacting said membranes with said engineered ionophores, metal ion chelate complexes thereof, pharmaceutical compositions thereof, the components of kits thereof, or the like, or any combination thereof.
    Type: Application
    Filed: March 24, 2023
    Publication date: June 26, 2025
    Inventors: Amit Choudhary, Kei Yamada, Arghya Deb, Veronika Shoba, Basudeb Maji
  • Publication number: 20250195668
    Abstract: The present disclosure relates to bifunctional chemical conjugation molecules, which find utility as modifiers of target substrates. The present disclosure includes multifunctional compounds comprising an enzyme binding moiety, a chemical linker moiety, and a target binding moiety, which may further include an electrophilic reactive group. Molecules according to the present invention find use making substrate modifications such as post-translational modifications to proteins that are not the natural substrate of the enzyme. Diseases or disorders may be treated or prevented with molecules of the present disclosure.
    Type: Application
    Filed: December 20, 2024
    Publication date: June 19, 2025
    Inventors: Amit Choudhary, Veronika Shoba, Arghya Deb, Tuan Nguyen, Sophia Lai, Dhanushka Munkanatta Godage, Praveen Tiwari, Ashley Modell, Sachini Siriwardena
  • Publication number: 20250109177
    Abstract: Aspects of the disclosure relate to compositions and methods for targeted protein degradation. In some embodiments, the disclosure relates to methods of evolving protein degrons to interact with certain small molecule inducers (e.g., VS-777, PT-179, or PK-1016). In some embodiments, the disclosure relates to compositions (e.g., peptides, nucleic acids encoding the protein degrons, etc.) used for targeted protein degradation. In some embodiments, the disclosure relates to methods of degrading a target polypeptide in a cell.
    Type: Application
    Filed: December 12, 2024
    Publication date: April 3, 2025
    Applicants: The Broad Institute, Inc., President and Fellows of Harvard College, The Brigham and Women's Hospital, Inc.
    Inventors: David R. Liu, Amit Choudhary, Jaron August McClure Mercer, Stephan DeCarlo, Praveen Tiwari, Praveen Kokkonda, Veronika Shoba, Arghya Deb, Sreekanth Vedagopuram
  • Publication number: 20250066325
    Abstract: This invention is related to molecules and methods of use of said molecules or compounds comprising said molecules. A molecule may be a pomalidomide or a thalidomide analogue. A method of inducing degradation of a target protein comprising one or more zinc finger polypeptides in a cell may comprise exposing a cell transfected with the target protein with a molecule as described herein, a pharmaceutically acceptable salt thereof, or any combination thereof. A method of inducing degradation of a target protein comprising one or more FK506 binding protein (FKBP) domains or degradation of a target amine in a cell may comprise exposing a cell transfected with the target protein or comprising the target amine with a composition comprising a molecule as described herein, a pharmaceutically acceptable salt thereof, or any combination of compositions comprising molecules as described herein and pharmaceutically acceptable salts thereof. A method may improve on-target effects and reduce off-target effects.
    Type: Application
    Filed: November 4, 2022
    Publication date: February 27, 2025
    Inventors: Amit Choudhary, Tuan Nguyen, Sreekanth Vedagopuram, Veronika Shoba, Arghya Deb, Praveen Tiwari, Praveen Kokkonda, Jaron Mercer
  • Publication number: 20240024490
    Abstract: The present disclosure relates to bifunctional chemical conjugation molecules, which find utility as modifiers of target substrates. The present disclosure includes multifunctional compounds comprising an enzyme binding moiety, a chemical linker moiety, and a target binding moiety, which may further include an electrophilic reactive group. Molecules according to the present invention find use making substrate modifications such as post-translational modifications to proteins that are not the natural substrate of the enzyme. Diseases or disorders may be treated or prevented with molecules of the present disclosure.
    Type: Application
    Filed: April 8, 2022
    Publication date: January 25, 2024
    Inventors: Amit Choudhary, Veronika Shoba, Arghya Deb, Tuan Nguyen, Sophia Lai, Dhanushka Munkanatta Godage, Praveen Tiwari, Ashley Modell, Sachini Siriwardena