Patents by Inventor Barend Bouma

Barend Bouma has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20120189615
    Abstract: The invention relates to the field of biochemistry, molecular biology, structural biology and medicine. More in particular, the invention relates to cross-? structures and the biological role of these cross-? structures. In one embodiment, the invention discloses a method for modulating extracellular protein degradation and/or protein clearance comprising modulating cross-?(beta) structure formation (and/or cross-? structure-mediated activity) of the protein present in the circulation.
    Type: Application
    Filed: April 2, 2012
    Publication date: July 26, 2012
    Inventors: Barend Bouma, Martijn F. B. G. Gebbink, Onno W. Kranenburg, Louise M. J. Kroon-Batenburg
  • Patent number: 8158585
    Abstract: The invention relates to the field of biochemistry, molecular biology, structural biology and medicine. More in particular, the invention relates to cross-? structures and the biological role of these cross-? structures. In one embodiment, the invention discloses a method for modulating extracellular protein degradation and/or protein clearance comprising modulating cross-?(beta) structure formation (and/or cross-? structure-mediated activity) of the protein present in the circulation.
    Type: Grant
    Filed: October 31, 2007
    Date of Patent: April 17, 2012
    Assignee: CrossBeta Biosciences B.V.
    Inventors: Barend Bouma, Martin F. B. G. Gebbink, Onno W. Kranenburg, Louise M. J. Kroon-Batenburg
  • Patent number: 8114832
    Abstract: The invention relates to the detection and/or removal of conformationally altered proteins and/or molecules comprising a cross-? structure from a pharmaceutical composition. Disclosed is that unwanted and/or toxic side effects of pharmaceuticals are caused by proteins present in the pharmaceutical and adopting a cross-? structure conformation. Further disclosed is a method for detecting a protein in a pharmaceutical composition, the method comprising: contacting the pharmaceutical composition or any of its constituents comprising a protein with at least one cross-? structure-binding compound resulting in a bound protein and/or peptide comprising a cross-? structure and; detecting whether bound protein and/or peptide comprising a cross-? structure are present in the pharmaceutical composition or any of its constituents comprising a protein. Further described are methods for removing cross-? structures from a pharmaceutical composition and controlling the manufacture of a pharmaceutical composition.
    Type: Grant
    Filed: July 13, 2005
    Date of Patent: February 14, 2012
    Assignee: Crossbeta Biosciences B.V.
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Patent number: 8067187
    Abstract: The invention relates to the field of biochemistry, biophysical chemistry, molecular biology, structural biology and medicine. More in particular, the invention relates to cross-? structure conformation. Even more particular, the invention relates to compounds capable of binding to a compound with cross-? structure conformation, i.e., cross-? structure binding compounds and uses thereof.
    Type: Grant
    Filed: July 13, 2006
    Date of Patent: November 29, 2011
    Assignee: Crossbeta Biosciences B.V.
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20110287047
    Abstract: The invention provides means and methods for producing and/or selecting immunogenic compositions, comprising providing said composition with at least one epitope for a B-cell receptor and/or at least one epitope for a T-cell receptor, coupled to a protein that comprises at least one crossbeta structure, and testing at least one immunogenic property.
    Type: Application
    Filed: November 18, 2009
    Publication date: November 24, 2011
    Applicant: Crossbeta Biosciences B.V.
    Inventors: Barend Bouma, Johan Renes, Paulus J.G.M. Steverink
  • Publication number: 20110052564
    Abstract: The invention provides means and methods for producing and/or selecting immunogenic compositions, comprising providing said composition with at least one crossbeta structure and testing at least one immunogenic property.
    Type: Application
    Filed: November 7, 2008
    Publication date: March 3, 2011
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma, Paulus Johannes Gerardus Maria Steverink, Johan Renes
  • Publication number: 20110008376
    Abstract: The invention provides means and methods for producing and/or selecting immunogenic compositions capable of activating a T-cell and/or a T-cell response, comprising providing said composition with at least one crossbeta structure and testing at least one immunogenic property.
    Type: Application
    Filed: November 7, 2008
    Publication date: January 13, 2011
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma, Paulus Johannes Gerardus Maria Steverink, Johan Renes
  • Publication number: 20100015126
    Abstract: The invention relates to the field of biochemistry, biophysical chemistry, molecular biology, structural biology, immunology, cellular biology and medicine. More in particular, the invention relates to the capability (or property) of chaperones to bind a crossbeta structure. Even more in particular, the invention relates to extracellular chaperones such as BiP, haptoglobin, hsp72 or clusterin. The present invention provides the insight that a chaperone molecule and more in specific an extra-cellular chaperone molecule (such as for example BiP, clusterin, hsp72 or haptoglobin) is capable of interacting with a crossbeta structure and/or a molecule comprising a crossbeta structure and/or a molecule comprising a crossbeta structure precursor. Based on this insight, the present inventors have developed multiple methods and means.
    Type: Application
    Filed: March 16, 2007
    Publication date: January 21, 2010
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20090202980
    Abstract: The invention relates to the field of biochemistry, molecular biology, structural biology and medicine. More in particular, the invention relates to cross-? structures and the biological role of these cross-? structures.
    Type: Application
    Filed: March 21, 2006
    Publication date: August 13, 2009
    Applicant: Crossbeta Biosciences B.V.
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma, Onno Wouter Kranenburg, Louise Maria Johanna Kroon
  • Publication number: 20090191228
    Abstract: Provided is means and methods for producing and/or selecting immunogenic compositions capable of activating a T-cell and/or a T-cell response, comprising providing the composition with at least one cross-beta structure and testing at least one immunogenic property.
    Type: Application
    Filed: November 7, 2008
    Publication date: July 30, 2009
    Applicant: Crossbeta Biosciences B.V.
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma, Paulus Johannes Gerardus Maria Steverink, Johan Renes
  • Publication number: 20090155254
    Abstract: The present invention provides a method for selecting from a collection of IgIV molecules, at least one IgIV molecule comprising an affinity region that is capable of interacting with a misfolded protein and/or with an epitope of a cross-? structure and/or with an epitope of a protein comprising a cross-? structure, said method comprising contacting a collection of IgIV molecules with a misfolded protein and/or with a cross-? structure and/or with a protein comprising a cross-? structure and collecting at least one IgIV molecule comprising an affinity region interacting with said misfolded protein and/or epitope.
    Type: Application
    Filed: February 16, 2007
    Publication date: June 18, 2009
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20090142377
    Abstract: Described are means and methods for producing and/or selecting immunogenic compositions, comprising providing the composition with at least one cross-beta structure and testing at least one immunogenic property.
    Type: Application
    Filed: November 7, 2008
    Publication date: June 4, 2009
    Applicant: Crossbeta Biosciences B.V.
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma, Paulus Johannes Gerardus Maria Steverink, Johan Renes
  • Publication number: 20080267948
    Abstract: The invention relates to the field of biochemistry, biophysical chemistry, molecular biology, structural biology and medicine. More in particular, the invention relates to cross-? structure conformation. Even more particular, the invention relates to compounds capable of binding to a compound with cross-? structure conformation, i.e. cross-? structure binding compounds and uses thereof.
    Type: Application
    Filed: July 13, 2006
    Publication date: October 30, 2008
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20080249606
    Abstract: The invention relates to the field of biochemistry, biophysical chemistry, molecular biology, structural biology and medicine. More in particular, the invention relates to cross-? structure conformation. The invention provides a method for determining a difference in the cross-? structure content of a protein in a reference sample compared to said protein in a test sample wherein the test sample has been subjected to a treatment that is expected to have an effect on the cross-? structure content of said protein comprising—determining in said reference sample the cross-? structure content of said protein—subjecting said protein to a treatment that is expected to have an effect on the cross-? structure content to obtain said test sample—determining in said obtained test sample the cross-? structure content of said protein—determining whether the cross-? structure content of the reference sample is different from the cross-? structure content in the test sample.
    Type: Application
    Filed: July 13, 2006
    Publication date: October 9, 2008
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20080241165
    Abstract: The invention relates to the field of biochemistry, molecular biology, structural biology and medicine. More in particular, the invention relates to cross-? structures and the biological role of these cross-? structures. In one embodiment, the invention discloses a method for modulating extracellular protein degradation and/or protein clearance comprising modulating cross-?(beta) structure formation (and/or cross-? structure-mediated activity) of the protein present in the circulation.
    Type: Application
    Filed: October 31, 2007
    Publication date: October 2, 2008
    Applicant: Crossbeta Biosciences B.V.
    Inventors: Louise Maria Johanna Kroon-Batenburg, Barend Bouma, Onno Wouter Kranenburg, Martijn Frans Ben Gerard Gebbink Bunnik
  • Publication number: 20080220446
    Abstract: The invention relates to the field of aqueous solutions comprising a protein. More specifically, the invention relates to the detection and/or removal of conformationally altered proteins and/or peptides comprising a cross-? structure from an aqueous solution comprising a protein. The invention provides methods for detecting and/or removing proteins and/or peptides comprising a cross-? structure from an aqueous solution comprising a protein, said method comprising contacting said aqueous solution comprising a protein with at least one cross-? structure-binding compound resulting in a bound protein or peptide with cross-? structure. The invention further provides a aqueous solution comprising a protein obtainable by a method of the invention, and a kit for carrying out the methods of the invention.
    Type: Application
    Filed: July 13, 2006
    Publication date: September 11, 2008
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20080207488
    Abstract: The invention relates to the field of compositions comprising a protein, more specifically to pharmaceutical compositions. More specifically, the invention relates to the detection and/or removal of conformationally altered proteins and/or molecules comprising a cross-? structure from a pharmaceutical composition or any of its constituents comprising a protein. The present invention discloses that unwanted and/or toxic side effects of pharmaceuticals are caused by proteins present in said pharmaceutical and adopting a cross-b structure conformation.
    Type: Application
    Filed: July 13, 2006
    Publication date: August 28, 2008
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20080118529
    Abstract: The invention relates to novel methods and means for providing proteinaceous substances, such as peptides, polypeptides, glycoproteins, lipoproteins and complex compounds comprising the former in combination with other substances, such as nucleic acids, membrane structures, carbohydrate structures, with cross-? structures, which enhance the immunogenicity of said proteinaceous substance. The resulting peptides, proteins, glycoproteins, etc. are preferably used in vaccines. The invention provides a method for producing an immunogenic composition comprising at least one peptide, polypeptide, protein, glycoprotein and/or lipoprotein, comprising providing said composition with at least one cross-? structure. The invention also discloses the use of cross-? structures in the preparation of a vaccine for the prophylaxis of an infectious disease.
    Type: Application
    Filed: July 13, 2006
    Publication date: May 22, 2008
    Inventors: Martijn Frans Ben Gerard Gebbink, Barend Bouma
  • Publication number: 20070015206
    Abstract: The invention relates to the detection and/or removal of conformationally altered proteins and/or molecules comprising a cross-? structure from a pharmaceutical composition or any of its constituents comprising a protein. Disclosed iss that unwanted and/or toxic side effects of pharmaceuticals are caused by proteins present in the pharmaceutical and adopting a cross-? structure conformation. Further disclosed is a method for detecting a protein and/or peptide comprising a cross-? structure in a pharmaceutical composition or any of its constituents comprising a protein, the method comprising: contacting the pharmaceutical composition or any of its constituents comprising a protein with at least one cross-? structure-binding compound resulting in a bound protein and/or peptide comprising a cross-? structure and; detecting whether bound protein and/or peptide comprising a cross-? structure are present in the pharmaceutical composition or any of its constituents comprising a protein.
    Type: Application
    Filed: July 13, 2005
    Publication date: January 18, 2007
    Applicant: UMC Utrecht Holding B.V.
    Inventors: Martijn Frans Ben Gebbink, Barend Bouma
  • Publication number: 20070015133
    Abstract: The invention relates to the field of aqueous solutions comprising a protein. More specifically, the invention relates to the detection and/or removal of conformationally altered proteins and/or peptides comprising a cross-? structure from an aqueous solution comprising a protein. The invention provides methods for detecting and/or removing proteins and/or peptides comprising a cross-? structure from an aqueous solution comprising a protein, the method comprising contacting the aqueous solution comprising a protein with at least one cross-? structure-binding compound resulting in a bound protein or peptide with cross-? structure. The invention further provides a aqueous solution comprising a protein obtainable by a method of the invention, and a kit for carrying out the methods of the invention.
    Type: Application
    Filed: July 13, 2005
    Publication date: January 18, 2007
    Applicant: UMC Utrecht Holding B.V.
    Inventors: Martijn Gerard, Barend Bouma