Patents by Inventor Brant Wong

Brant Wong has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • SYSTEMS AND METHODS FOR PROBE DESIGN TO DETECT THE PRESENCE OF SIMPLE AND COMPLEX INDELS
    Publication number: 20200234791
    Abstract: Methods and systems for the determination of a collection of relevant single nucleotide polymorphisms (SNP) probe compatible insertion/deletion probes across a genome to determine probes that can detect a variety of insertions and deletions.
    Type: Application
    Filed: November 25, 2019
    Publication date: July 23, 2020
    Applicant: Affymetrix, Inc.
    Inventors: Jeanette Pruzan Schmidt, Christopher Davies, Brant Wong
  • Systems and methods for probe design to detect the presence of simple and complex indels
    Patent number: 10535420
    Abstract: Methods and systems for the determination of a collection of relevant single nucleotide polymorphisms (SNP) probe compatible insertion/deletion probes across a genome to determine probes that can detect a variety of insertions and deletions.
    Type: Grant
    Filed: March 15, 2013
    Date of Patent: January 14, 2020
    Assignee: Affymetrix, Inc.
    Inventors: Jeanette Pruzan Schmidt, Christopher Davies, Brant Wong
  • Method and computer software product for genomic alignment and assessment of the transcriptome
    Publication number: 20050244883
    Abstract: In one embodiment of the invention, computerized methods are provided for analyzing transcript sequence clusters by aligning the transcripts with genomic sequences to determine whether a cluster needs to be sub-clustered and whether clusters should be merged. In addition, in some embodiments, transcript sequences are trimmed according to their alignment with their corresponding genomic sequences. The modified clusters and trimmed sequences may be used for nucleic acid probe array design.
    Type: Application
    Filed: June 27, 2005
    Publication date: November 3, 2005
    Applicant: Affymetrix, INC.
    Inventors: Alan Williams, Simon Cawley, Raymond Wheeler, Brant Wong, David Kulp
  • Method and computer software product for defining multiple probe selection regions
    Publication number: 20040133360
    Abstract: In one embodiment of the invention, methods are provided for selecting probes upstream from alternative polyadenylation sites of a target sequence cluster.
    Type: Application
    Filed: December 16, 2003
    Publication date: July 8, 2004
    Applicant: Affymetrix, INC.
    Inventors: Ray Wheeler, Simon Cawley, David Kulp, Alan Williams, Brant Wong
  • Method and computer software product for predicting polyadenylation sites
    Publication number: 20030167132
    Abstract: In one embodiment of the invention, computerized methods are provided for detecting polyadenylation sites and polyadenylation signals.
    Type: Application
    Filed: December 21, 2001
    Publication date: September 4, 2003
    Applicant: AFFYMETRIX, INC.
    Inventors: Simon Cawley, Raymond Wheeler, David Kulp, Alan Williams, Brant Wong
  • Method and computer software product for defining multiple probe selection regions
    Publication number: 20030119007
    Abstract: In one embodiment of the invention, methods are provided for selecting probes upstream from alternative polyadenylation sites of a target sequence cluster.
    Type: Application
    Filed: December 21, 2001
    Publication date: June 26, 2003
    Applicant: AFFYMETRIX, INC.
    Inventors: Ray Wheeler, Simon Cawley, David Kulp, Alan Williams, Brant Wong
  • Method and computer software product for genomic alignment and assessment of the transcriptome
    Publication number: 20030120431
    Abstract: In one embodiment of the invention, computerized methods are provided for analyzing transcript sequence clusters by aligning the transcripts with genomic sequences to determine whether a cluster needs to be sub-clustered and whether clusters should be merged. In addition, in some embodiments, transcript sequences are trimmed according to their alignment with their corresponding genomic sequences. The modified clusters and trimmed sequences may be used for nucleic acid probe array design.
    Type: Application
    Filed: December 21, 2001
    Publication date: June 26, 2003
    Applicant: AFFYMETRIX, INC.
    Inventors: Alan Williams, Simon Cawley, Raymond Wheeler, Brant Wong, David Kulp
  • Method and computer software product for determining orientation of sequence clusters
    Publication number: 20020168651
    Abstract: In one embodiment of the invention, computerized methods are provided for determining the orientation of EST sequence Clusters. The method employs Bayesian analysis of evidence.
    Type: Application
    Filed: December 4, 2001
    Publication date: November 14, 2002
    Applicant: AFFYMETRIX, INC.
    Inventors: Simon Cawley, Raymond Wheeler, Brant Wong, Alan Williams, David Kulp