Abstract: Methods and systems for controlling a transport refrigeration system are provided. In one instance, the method includes identifying an operational mode change request for a heat exchanger unit of the transport refrigeration system. The method also includes preparing the transport refrigeration system for the operational mode change of the heat exchanger unit, wherein preparing the transport refrigeration system for the operational mode change of the heat exchanger unit includes performing a load control action, the load control action preventing a power source of the transport refrigeration system from at least one of operating outside of a predefined revolutions per minute (RPM) bandwidth and exceeding a predefined power limit of the power source. Also, the method includes changing the operational mode of the heat exchanger unit; and removing the load control action.