Patents by Inventor Brian D. Mather

Brian D. Mather has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 12654165
    Abstract: In one example, a flow cell includes a base support and a protrusion over the base support, where the protrusion is a different material than the base support. The flow cell further includes a first functionalized layer over a first portion of the protrusion, a second functionalized layer over a second portion of the protrusion, and first and second primer sets respectively attached to the first and second functionalized layers.
    Type: Grant
    Filed: September 27, 2021
    Date of Patent: June 16, 2026
    Assignee: Illumina, Inc.
    Inventors: Brinda Kodira Cariappa, Jeffrey S. Fisher, Sahngki Hong, Lewis J. Kraft, Brian D. Mather, Vanessa Montaño-Machado
  • Patent number: 12649137
    Abstract: In an example method, a polymeric hydrogel is applied to a surface of a substrate including depressions separated by interstitial regions. Before or after the polymeric hydrogel is applied, a primer set is grafted to the polymeric hydrogel to form a grafted layer. The primer set includes cleavable first primers and uncleavable second primers. At a predetermined region of the grafted layer within a portion of at least some of the depressions, some of the cleavable first primers and some of the uncleavable second primers are altered to respectively introduce cleavable second primers and uncleavable first primers.
    Type: Grant
    Filed: December 22, 2022
    Date of Patent: June 9, 2026
    Assignee: Illumina, Inc.
    Inventors: Tanmay Ghonge, Brian D. Mather
  • Publication number: 20260125753
    Abstract: An example of a method includes providing a substrate with an exposed surface comprising a first chemical group, wherein the providing optionally comprises modifying the exposed surface of the substrate to incorporate the first chemical group; reacting the first chemical group with a first reactive group of a functionalized polymer molecule to form a functionalized polymer coating layer covalently bound to the exposed surface of the substrate; grafting a primer to the functionalized polymer coating layer by reacting the primer with a second reactive group of the functionalized polymer coating layer; and forming a water-soluble protective coating on the primer and the functionalized polymer coating layer. Examples of flow cells incorporating examples of the water-soluble protective coating are also disclosed herein.
    Type: Application
    Filed: December 31, 2025
    Publication date: May 7, 2026
    Inventors: Sean M. Ramirez, Brian D. Mather, Edwin Li, Sojeong Moon, Innsu Daniel Kim, Alexandre Richez, Ludovic Vincent, Xavier von Hatten, Hai Quang Tran, Maxwell Zimmerley, Julia Morrison, Gianluca Andrea Artioli, Krystal Sly, Hayden Black, Lewis J. Kraft, Hong Xie, Wei Wei, Ryan Sanford
  • Patent number: 12584035
    Abstract: A flow cell includes a substrate and a copolymer coating. The copolymer coating includes copolymer chains, each having recurring units of formula (I): and formula (II):. In formula (I), R1 is —H, a halogen, an alkyl, an alkoxy, an alkenyl, an alkynyl, a cycloalkyl, an aryl, a heteroaryl, a heterocycle, or optionally substituted variants thereof; R2 is an azido; each (CH2)p can be optionally substituted; and p is an integer from 1 to 50. In formula (II), each of R3, R3?, R4, R4? is —H, R5, —OR5, —C(O)OR5, —C(O)R5, —OC(O)R5, —C(O)NR6R7, or —NR6R7; R5 is —H, —OH, an alkyl, a cycloalkyl, a hydroxyalkyl, an aryl, a heteroaryl, a heterocycle, or optionally substituted variants thereof; and each of R6 and R7 is —H or an alkyl. Some copolymer chains include at least one alkoxyamine end group.
    Type: Grant
    Filed: October 19, 2021
    Date of Patent: March 24, 2026
    Assignee: Illumina, Inc.
    Inventors: Raymond Campos, Brian D. Mather, Sean M. Ramirez
  • Patent number: 12570831
    Abstract: Embodiments of the present application relate to substrate comprising a surface-bound azido functionalized organosilane wherein the substrate is free or substantially free of a hydrogel or a hydrophilic polymer. Methods of preparing such substrate surface for sequencing applications are also disclosed.
    Type: Grant
    Filed: June 13, 2022
    Date of Patent: March 10, 2026
    Assignee: ILLUMINA, INC.
    Inventors: Xiaoyu Ma, Weixian Xi, Jeffrey S. Fisher, Fei Shen, Wayne N. George, Brian D. Mather
  • Patent number: 12540354
    Abstract: An example of a method includes providing a substrate with an exposed surface comprising a first chemical group, wherein the providing optionally comprises modifying the exposed surface of the substrate to incorporate the first chemical group; reacting the first chemical group with a first reactive group of a functionalized polymer molecule to form a functionalized polymer coating layer covalently bound to the exposed surface of the substrate; grafting a primer to the functionalized polymer coating layer by reacting the primer with a second reactive group of the functionalized polymer coating layer; and forming a water-soluble protective coating on the primer and the functionalized polymer coating layer. Examples of flow cells incorporating examples of the water-soluble protective coating are also disclosed herein.
    Type: Grant
    Filed: May 9, 2023
    Date of Patent: February 3, 2026
    Assignees: Illumina, Inc., Illumina Cambridge Limited, Illumina Singapore Pte. Ltd.
    Inventors: Sean M. Ramirez, Brian D. Mather, Edwin Li, Sojeong Moon, Innsu Daniel Kim, Alexandre Richez, Ludovic Vincent, Xavier von Hatten, Hai Quang Tran, Maxwell Zimmerley, Julia Morrison, Gianluca Andrea Artioli, Krystal Sly, Hayden Black, Lewis J. Kraft, Hong Xie, Wei Wei, Ryan Sanford
  • Patent number: 12523931
    Abstract: An example of a flow cell includes a substrate; a first primer set attached to a first region on the substrate, the first primer set including an un-cleavable first primer and a cleavable second primer; and a second primer set attached to a second region on the substrate, the second primer set including a cleavable first primer and an un-cleavable second primer.
    Type: Grant
    Filed: May 17, 2024
    Date of Patent: January 13, 2026
    Assignees: Illumina, Inc., Illumina Cambridge Limited
    Inventors: Jeffrey S. Fisher, Brian D. Mather, Maria Candelaria Rogert Bacigalupo, Justin Fullerton, Ludovic Vincent, Lewis J. Kraft, Sahngki Hong, Boyan Boyanov, M. Shane Bowen, Sang Park, Wayne N. George, Andrew A. Brown, Dajun Yuan
  • Patent number: 12416041
    Abstract: An example of a kit includes a flow cell and a cleavage mix. An example flow cell includes a substrate; a catalytic polymeric hydrogel on the substrate, the catalytic polymeric hydrogel including a deblocking catalyst; and an amplification primer attached to the catalytic polymeric hydrogel. The deblocking catalyst accelerates cleavage of a blocking group of a 3? OH blocked nucleotide introduced to the flow cell and incorporated into a template strand attached to the amplification primer. An example of the cleavage mix includes a component to initiate cleavage of the blocking group.
    Type: Grant
    Filed: November 25, 2020
    Date of Patent: September 16, 2025
    Assignees: Illumina, Inc., Illumina Cambridge Limited
    Inventors: Wayne N. George, Brian D. Mather, Andrew A. Brown, Pietro Gatti Lafranconi, Maria Candelaria Rogert Bacigalupo, Antoine Francais, Xiaohai Liu
  • Publication number: 20250263785
    Abstract: An example of a kit includes a flow cell and a cleavage mix. An example flow cell includes a substrate; a catalytic polymeric hydrogel on the substrate, the catalytic polymeric hydrogel including a deblocking catalyst; and an amplification primer attached to the catalytic polymeric hydrogel. The deblocking catalyst accelerates cleavage of a blocking group of a 3? OH blocked nucleotide introduced to the flow cell and incorporated into a template strand attached to the amplification primer. An example of the cleavage mix includes a component to initiate cleavage of the blocking group.
    Type: Application
    Filed: May 2, 2025
    Publication date: August 21, 2025
    Inventors: Wayne N. George, Brian D. Mather, Andrew A. Brown, Pietro Gatti Lafranconi, Maria Candelaria Rogert Bacigalupo, Antoine Francais, Xiaohai Liu
  • Publication number: 20240426739
    Abstract: An example flow cell includes a first substrate; a second substrate attached to the first substrate; a flow channel defined between the first substrate and the second substrate; a first primer set attached to the first substrate, the first primer set including an un-cleavable first primer and a cleavable second primer; a second primer set attached to the second substrate, the second primer set including a cleavable first primer and an un-cleavable second primer; and a removable blocking mechanism passivating i) the first primer set or the second primer set or ii) the cleavable first primer and the cleavable second primer.
    Type: Application
    Filed: June 11, 2024
    Publication date: December 26, 2024
    Inventors: Jeffrey S. Fisher, Justin Fullerton, Brian D. Mather, Maxwell Zimmerley
  • Patent number: 12152237
    Abstract: An example of a functionalized plasmonic nanostructure includes a plasmonic nanostructure core; a polymeric hydrogel attached to the plasmonic nanostructure core, the polymeric hydrogel having a thickness ranging from about 10 nm to about 200 nm; and a plurality of primers attached to side chains or arms of the polymeric hydrogel, wherein at least some of the plurality of primers are attached to the polymeric hydrogel at different distances from the plasmonic nanostructure core.
    Type: Grant
    Filed: November 12, 2021
    Date of Patent: November 26, 2024
    Assignees: Illumina, Inc., Illumina Cambridge Limited
    Inventors: Gianluca Andrea Artioli, Mathieu Lessard-Viger, Brian D. Mather, Xavier von Hatten
  • Publication number: 20240302738
    Abstract: An example of a flow cell includes a substrate; a first primer set attached to a first region on the substrate, the first primer set including an un-cleavable first primer and a cleavable second primer; and a second primer set attached to a second region on the substrate, the second primer set including a cleavable first primer and an un-cleavable second primer.
    Type: Application
    Filed: May 17, 2024
    Publication date: September 12, 2024
    Inventors: Jeffrey S. Fisher, Brian D. Mather, Maria Candelaria Rogert Bacigalupo, Justin Fullerton, Ludovic Vincent, Lewis J. Kraft, Sahngki Hong, Boyan Boyanov, M. Shane Bowen, Sang Park, Wayne N. George, Andrew A. Brown, Dajun Yuan
  • Patent number: 12050194
    Abstract: In an example, a sensing system includes a pH sensor. The pH sensor includes two electrodes and a conductive channel operatively connected to the two electrodes. A complex is attached to the conductive channel of the pH sensor. The complex includes a polymerase linked to at least one pH altering moiety that is to participate in generating a pH change within proximity of the conductive channel from consumption of a secondary substrate in a fluid that is exposed to the pH sensor. The at least one pH altering moiety is selected from the group consisting of an enzyme, a metal coordination complex, a co-factor, and an activator.
    Type: Grant
    Filed: January 24, 2020
    Date of Patent: July 30, 2024
    Assignee: Illumina, Inc.
    Inventors: Jeffrey S. Fisher, Brian D. Mather, Kaitlin M. Pugliese, Jeffrey G. Mandell, Maria Candelaria Rogert Bacigalupo, Boyan Boyanov
  • Publication number: 20240207839
    Abstract: An example of a flow cell includes a substrate; a plurality of reactive regions spatially separated from one another across the substrate; and a plurality of independently removable coatings respectively positioned over each of the plurality of reactive regions. Each of the plurality of reactive regions includes a polymeric hydrogel layer; and a reactive entity attached to the polymeric hydrogel layer. At least one of the independently removable coatings is a composite that includes a thermo-responsive polymer and a photo-thermal additive.
    Type: Application
    Filed: December 15, 2023
    Publication date: June 27, 2024
    Inventors: Johan Sebastian Basuki, Brian D. Mather, Sebastien Georg Gabriel Ricoult, Alexandra Szemjonov
  • Publication number: 20240207846
    Abstract: An example of a flow cell includes a substrate; a plurality of reactive regions spatially separated from one another across the substrate; and a plurality of independently removable coatings respectively positioned over each of the plurality of reactive regions. Each of the plurality of reactive regions includes a polymeric hydrogel layer; and a reactive entity attached to the polymeric hydrogel layer.
    Type: Application
    Filed: December 15, 2023
    Publication date: June 27, 2024
    Inventors: Johan Sebastian Basuki, Tyler J. Dill, Justin Fullerton, Tanmay Ghonge, Brian D. Mather, Wei Wei
  • Publication number: 20240183770
    Abstract: In one example, a flow cell includes a substrate, an electrode positioned on the substrate, and a patterned material positioned on the electrode. In this example, the patterned material includes depressions separated by interstitial regions, and a functionalized surface of the electrode is exposed at each of the depressions. In this example, the flow cell further includes a primer grafted to the functionalized surface in each of the depressions. In another example, a flow cell includes a substrate and a patterned electrode positioned on the substrate. In this other example, the patterned electrode includes depressions separated by interstitial regions, and a functionalized surface of the substrate exposed at each of the depressions. In this other example, a primer is grafted to the functionalized surface in each of the depressions.
    Type: Application
    Filed: December 8, 2023
    Publication date: June 6, 2024
    Inventors: Hayden Black, Brian D. Mather
  • Patent number: 11988957
    Abstract: An example of a flow cell includes a substrate; a first primer set attached to a first region on the substrate, the first primer set including an un-cleavable first primer and a cleavable second primer; and a second primer set attached to a second region on the substrate, the second primer set including a cleavable first primer and an un-cleavable second primer.
    Type: Grant
    Filed: May 15, 2023
    Date of Patent: May 21, 2024
    Assignees: Illumina, Inc., Illumina Cambridge Limited
    Inventors: Jeffrey S. Fisher, Brian D. Mather, Maria Candelaria Rogert Bacigalupo, Justin Fullerton, Ludovic Vincent, Lewis J. Kraft, Sahngki Hong, Boyan Boyanov, M. Shane Bowen, Sang Park, Wayne N. George, Andrew A. Brown
  • Patent number: 11958067
    Abstract: A powder spray gun includes a powder flow path inlet and a powder flow path outlet, the powder flow path inlet being connectable in a first configuration to a dilute phase powder pump and in a second configuration to a dense phase powder pump, wherein the powder spray gun comprises a spray nozzle that is the same for the first and second configurations. The powder flow path is provided by a powder tube that extends through the gun, with the powder tube having a first diameter at an inlet portion of the spray gun and a second diameter at an outlet portion of the spray gun, with the second diameter being greater than the first diameter. The powder flow path may also include a conical transition portion, and a member for adding air to the powder flow.
    Type: Grant
    Filed: July 8, 2018
    Date of Patent: April 16, 2024
    Assignee: Nordson Corporation
    Inventors: Terrence M. Fulkerson, Brian D. Mather, Benjamin J. Becker
  • Patent number: 11925952
    Abstract: A spray nozzle assembly is provided with an electrode, a wear resistant member, and a compliant sleeve. The wear resistant member supports the electrode and is supported by the compliant sleeve. For coating operations that use abrasive powder such as porcelain enamel, the wear resistant member may comprise ceramic. The compliant sleeve may be made of an elastic material such as plastic, which allows one end of the compliant sleeve to receive an end of a glass powder tube. The wear resistant member may be in the form of a ceramic spider. The electrode may be installed in-line with a powder flow path defined by the powder tube, which extends through a spray gun body.
    Type: Grant
    Filed: November 7, 2018
    Date of Patent: March 12, 2024
    Assignee: Nordson Corporation
    Inventors: Brian D. Mather, Dale R. Juhn
  • Publication number: 20230416435
    Abstract: A co-polymer includes a plurality of a first monomer including a terminal functional group that is to attach to at least two different primers; a plurality of a second monomer including a second functional group that is different from the terminal functional group, and that is selected from the group consisting of a phenyl group, methoxy propyl, glycosyl, vinyl pyrrolidone, and an imidazole group; and a plurality of a third monomer that is different from the first and second monomers. This co-polymer may be used in a flow cell, and may enhance the clustering efficiency and kinetics.
    Type: Application
    Filed: June 6, 2023
    Publication date: December 28, 2023
    Inventors: Gianluca Andrea Artioli, Timothy J.N. Beech, Mathieu Lessard-Viger, Rebecca Turk-MacLeod, Brian D. Mather, Weixian Xi, Xavier von Hatten