Patents by Inventor BRIAN JAMES PAUL

BRIAN JAMES PAUL has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230340442
    Abstract: The present disclosure is generally related to compositions and methods for constructing and/or obtaining B. licheniformis cells (e.g., protein production hosts) comprising enhanced protein production capabilities. Thus, certain embodiments are related to genetically modified Bacillus licheniformis strains derived from parental B. licheniformis strains producing increased amounts of one or more proteins of interest.
    Type: Application
    Filed: January 14, 2021
    Publication date: October 26, 2023
    Inventors: Steven D. Doig, Ryan L. Frisch, Hongxian He, Chris Leeflang, Zhen Ma, Brian James Paul
  • Publication number: 20220403359
    Abstract: Disclosed are compositions and methods relating to maltopentaose/maltohexaose-forming ?-amylases. The variant ?-amylases are useful, for example, for starch liquefaction and saccharification, for cleaning starchy stains in laundry, dishwashing, and other applications, for textile processing (e.g., desizing), in animal feed for improving digestibility, and for baking and brewing.
    Type: Application
    Filed: October 20, 2020
    Publication date: December 22, 2022
    Inventors: MANASI BHATE, HON KIT CHAN, JONATHAN LASSILA, BRIAN JAMES PAUL, SANDRA W. RAMER, PATRICIA TRAN
  • Publication number: 20210122998
    Abstract: An automatic dishwashing cleaning composition comprising a variant ?-amylase wherein the variant ?-amylase comprises amino acid substitution(s) selected from the group consisting of: i) a mutation at position 91 and one or more mutation(s) at an amino acid residue at the base of the ?-amylase TIM barrel structure, defined as residues 6, 7, 40, 96, 98, 100, 229, 230, 231, 262, 263, 285, 286, 287, 288, 322, 323, 324, 325, 362, 363 and 364; and/or ii) a mutation at position 172 and a mutation in position 288 or 324; and/or iii) Y364L referring to SEQ ID NO: 1 for numbering.
    Type: Application
    Filed: October 9, 2020
    Publication date: April 29, 2021
    Inventors: Michelle JACKSON, Katarzyna BELL-RUSIEWICZ, Manasi BHATE, Hon Kit CHAN, Jonathan LASSILA, Brian James PAUL, Sandra W. RAMER, Patricia TRAN
  • Patent number: 10308964
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: November 1, 2016
    Date of Patent: June 4, 2019
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 9909149
    Abstract: Dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Grant
    Filed: April 12, 2017
    Date of Patent: March 6, 2018
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Lori Ann Maggio-Hall, Brian James Paul, Steven Cary Rothman, Rick W. Ye
  • Publication number: 20170218405
    Abstract: Dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Application
    Filed: April 12, 2017
    Publication date: August 3, 2017
    Inventors: Lori Ann Maggio-Hall, Brian James PAUL, Steven Cary ROTHMAN, Rick W. YE
  • Patent number: 9650624
    Abstract: Dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Grant
    Filed: December 27, 2013
    Date of Patent: May 16, 2017
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Lori Ann Maggio-Hall, Brian James Paul, Steven Cary Rothman, Rick W. Ye
  • Publication number: 20170101653
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Application
    Filed: November 1, 2016
    Publication date: April 13, 2017
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 9611482
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: March 15, 2013
    Date of Patent: April 4, 2017
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 9512435
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: March 15, 2013
    Date of Patent: December 6, 2016
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Publication number: 20160326552
    Abstract: The invention relates, for example, to recombinant yeast cells for differential gene expression during the propagation and production phases of a fermentation-based production process, as well as methods for using the same.
    Type: Application
    Filed: December 22, 2014
    Publication date: November 10, 2016
    Inventors: Michael DAUNER, Brian James PAUL
  • Publication number: 20160319307
    Abstract: Ketol-acid reductoisomerase enzymes have been identified that provide high effectiveness in vivo as a step in an isobutanol biosynthetic pathway in bacteria and in yeast. These KARIs are members of a clade identified through molecular phylogenetic analysis called the SLSL Clade.
    Type: Application
    Filed: July 14, 2016
    Publication date: November 3, 2016
    Inventors: Vasantha Nagarajan, Brian James Paul, Wonchul Suh, Jean-Francois Tomb, Rick W. Ye
  • Patent number: 9297016
    Abstract: The present invention is related to a recombinant host cell, in particular a yeast cell, comprising a dihydroxy-acid dehydratase polypeptide. The invention is also related to a recombinant host cell having increased specific activity of the dihydroxy-acid dehydratase polypeptide as a result of increased expression of the polypeptide, modulation of the Fe—S cluster biosynthesis of the cell, or a combination thereof. The present invention also includes methods of using the host cells, as well as, methods for identifying polypeptides that increase the flux in an Fe—S cluster biosynthesis pathway in a host cell.
    Type: Grant
    Filed: February 17, 2011
    Date of Patent: March 29, 2016
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Dennis Flint, Brian James Paul, Rick W. Ye
  • Patent number: 9238828
    Abstract: Provided herein are polypeptides and polynucleotides encoding such polypeptides which have ketoisovalerate decarboxylase activity. Also provided are recombinant host cells comprising such polypeptides and polynucleotides and methods of use thereof.
    Type: Grant
    Filed: July 27, 2012
    Date of Patent: January 19, 2016
    Assignee: Butamax Advanced Biofuels LLC
    Inventors: Jessica McElvain, Daniel P O'Keefe, Brian James Paul, Mark S Payne, Steven Cary Rothman, Hongxian He
  • Patent number: 9181566
    Abstract: The invention relates to suitable screening strategies for evaluating various candidate promoters for differential gene expression during the propagation and production phases of a fermentation process. The invention also relates to recombinant host cells that comprise identified promoter nucleic acid sequences and methods for producing fermentation products employing the same.
    Type: Grant
    Filed: December 28, 2012
    Date of Patent: November 10, 2015
    Assignee: BUTAMAX ADVANCED BIOFUELS LLC
    Inventors: Michael Dauner, Arthur Leo Kruckeberg, Robert A Larossa, Brian James Paul, Wonchul Suh, Joseph Frederich Tuminello
  • Patent number: 9169499
    Abstract: An engineering method was developed to allow genetic modification and isolation of lactic acid bacteria cells that lack lactate dehydrogenase and acetolactate decarboxylase activities. In cells with these modifications and an isobutanol biosynthetic pathway, improved production of isobutanol was observed.
    Type: Grant
    Filed: September 29, 2010
    Date of Patent: October 27, 2015
    Assignee: BUTAMAX ADVANCED BIOFUELS LLC
    Inventors: Brian James Paul, Wonchul Suh
  • Patent number: 9080179
    Abstract: A high flux of metabolites from pyruvate to 2,3-butanediol in Lactobacillus plantarum was achieved through genetic engineering. Substantial elimination of lactate dehydrogenase activity in the presence of heterologously expressed butanediol dehydrogenase activity led to 2,3 butanediol production that was at least 49% of the total of major pyruvate-derived products.
    Type: Grant
    Filed: April 29, 2013
    Date of Patent: July 14, 2015
    Assignee: BUTAMAX ADVANCED BIOFUELS LLC
    Inventor: Brian James Paul
  • Publication number: 20140186910
    Abstract: Dihydroxy-acid dehydratase (DHAD) variants that display increased DHAD activity are disclosed. Such enzymes can result in increased production of compounds from DHAD requiring biosynthetic pathways. Also disclosed are isolated nucleic acids encoding the DHAD variants, recombinant host cells comprising the isolated nucleic acid molecules, and methods of producing butanol.
    Type: Application
    Filed: December 27, 2013
    Publication date: July 3, 2014
    Applicant: ButamaxTM Advanced Biofuels LLC
    Inventors: LORI ANN MAGGIO-HALL, BRIAN JAMES PAUL, STEVEN CARY ROTHMAN, RICK W. YE
  • Publication number: 20140141479
    Abstract: The invention relates to a recombinant host cell having (a) a modification in an endogenous polynucleotide encoding a polypeptide having dual-role hexokinase activity; (b) a heterologous polynucleotide encoding a polypeptide having hexose kinase activity; and optionally (c) a modification in an endogenous polynucleotide encoding a polypeptide having pyruvate decarboxylase activity. Additionally, the invention relates to methods of making and using such recombinant host cells including, for example, methods of increasing glucose consumption, methods of improving redox balance, and/or methods of increasing the production of a product of a pyruvate-utilizing pathway.
    Type: Application
    Filed: January 24, 2014
    Publication date: May 22, 2014
    Applicant: BUTAMAX(TM) ADVANCED BIOFUELS LLC
    Inventors: Larry Cameron Anthony, Arthur Leo Kruckeberg, Brian James Paul
  • Patent number: 8637281
    Abstract: Lactic acid bacterial (LAB) cells were modified such that they have a specific activity of dihydroxy-acid dehydratase enzyme activity that is increased to about 0.1 ?mol min?1 mg?1. LAB cells with even higher activities of 0.2 to 0.6 ?mol min?1 mg?1 of DHAD activity were obtained. These modified cells may be used to produce isobutanol when additional isobutanol biosynthetic pathway enzymes are expressed.
    Type: Grant
    Filed: September 29, 2009
    Date of Patent: January 28, 2014
    Assignee: Butamax(TM) Advanced Biofuels LLC
    Inventors: Brian James Paul, Wonchul Suh