Abstract: The present invention provides a method of analyzing multidimensional data using a computer as well as methods of displaying multidimensional data to a user for further analysis. The present invention provides for a method and system for state model Fitting. The system components include a detector and a computer operably connected to the detector. The computer accesses one or more logic instructions for receiving and analyzing raw data from the detector and generating a state model of the raw data based on probability weights.

Abstract: The present invention provides a method of analyzing multidimensional data using a computer as well as methods of displaying multidimensional data to a user for further analysis. In other aspects the present invention provides for a system for state model fitting, the system comprising a detector, and a computer operably connected to the detector, wherein the computer accesses one or more logic instructions for receiving raw data from the computer, and generating a state model of the raw data.

Abstract: A fluorescent probe including (1) a nucleotide sequence which (a) has a segment complementary to the polynucleotide target and (b) is capable of forming one or more imperfect hairpins with at least one of the hairpins including the just-mentioned segment or a part thereof; and (2) at least one donor fluorophore and at least one acceptor fluorophore covalently attached to the nucleotide sequence so that only when one or more imperfect hairpins are formed, one of the donor fluorophores and one of the acceptor fluorophores are in close proximity to allow resonance energy transfer between them. Also disclosed is a method of using such a probe.