Patents by Inventor Carlos Barbas

Carlos Barbas has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20070213269
    Abstract: Polypeptides that contain zinc finger-nucleotide binding regions that bind to nucleotide sequences of the formula TNN are provided. Compositions containing a plurality of polypeptides, isolated heptapeptides possessing specific binding activity, polynucleotides that encode such polypeptides and methods of regulating gene expression with such polypeptides, compositions and polynucleotides are also provided.
    Type: Application
    Filed: November 28, 2006
    Publication date: September 13, 2007
    Applicant: The Scripps Research Institute
    Inventors: Carlos Barbas, Birgit Dreier
  • Publication number: 20070178499
    Abstract: Fusion proteins including zinc finger tags that bind in a sequence-specific manner and a peptide, polypeptide, or protein can be prepared and expressed. Such fusion proteins can be used to generate protein arrays by binding the zinc finger tags to a DNA array. The fusion proteins can also be used to label cell surfaces with DNA tags. Fusion proteins according to the invention can be used to localize the peptide, polypeptide, or protein that is incorporated into the fusion protein by using a labeled DNA, such as a fluorescent DNA. The invention further includes vectors and host cells, as well as a method of analyzing double-stranded DNA.
    Type: Application
    Filed: January 5, 2007
    Publication date: August 2, 2007
    Applicant: The Scripps Research Institute
    Inventor: Carlos Barbas, III
  • Publication number: 20070154989
    Abstract: Polypeptides that contain zinc finger-nucleotide binding regions that bind to nucleotide sequences of the formula AGC are provided. Compositions containing a plurality of polypeptides, isolated heptapeptides possessing specific binding activity, polynucleotides that encode such polypeptides and methods of regulating gene expression with such polypeptides, compositions and polynucleotides are also provided.
    Type: Application
    Filed: December 19, 2006
    Publication date: July 5, 2007
    Applicant: The Scripps Research Institute
    Inventor: Carlos Barbas
  • Publication number: 20070122408
    Abstract: The present invention discloses methods of labeling Fc portions of antibodies, or fusion proteins incorporating Fc portions of antibodies, so that they can be used in immunostaining or immunolabeling procedures. A wide variety of labels can be used. A linker can be used between the label and the protein to be labeled, allowing for flexibility in labeling. A large variety of coupling reactions can be used to generate the labeled protein molecule, The protein molecule to be labeled can be part of a larger fusion protein. The labeled protein molecules can be used in immunostaining and immunolabeling procedures but also in in vivo applications for therapy and diagnostic imaging.
    Type: Application
    Filed: October 20, 2006
    Publication date: May 31, 2007
    Applicant: The Scripps Research Institute
    Inventor: Carlos Barbas
  • Publication number: 20070118923
    Abstract: The invention relates to the field of plant and agricultural technology. More specifically, the invention relates to the use of zinc finger proteins and fusions of said proteins to regulate gene expression and metabolic pathways in plants.
    Type: Application
    Filed: December 14, 2006
    Publication date: May 24, 2007
    Inventors: Carlos Barbas, Justin Stege, Xueni Guan, Bipin Dalmia
  • Publication number: 20070117986
    Abstract: A compound of Formula I is disclosed, in which R is a substituent containing a hydrogen bond-forming atom within three atoms from the ring carbon to which the substituent is bonded; X is CH2, O, S or NR1, wherein R1 is a hydrocarbyl group or an amino-protecting group having one to about 18 carbon atoms; R2 is hydrido or a hydrocarbyl group containing one to about twelve carbon atoms; and R3 is hydrido or methyl, but both R2 and R3 are not hydrido when X is CH2 A molecule of Formula I and those in which R2 and R3 can both be hydrido (Formula X) functions as a catalyst in a Mannich reaction to asymmetrically form ?-aminoaldehyde or ?-aminoketone diastereomeric products having two chiral centers on adjacent carbon atoms and in which the anti-diastereomers are in excess over the syn-diastereomers. Methods for carrying out those syntheses are also disclosed.
    Type: Application
    Filed: November 16, 2006
    Publication date: May 24, 2007
    Inventors: Fujie Tanaka, Carlos Barbas, Haile Zhang
  • Publication number: 20070020627
    Abstract: Transcription regulating polypeptides that contain a plurality of DNA binding domains are provided. The polypeptides optionally contain one or more transcription regulating domains. Polynucleotides that encode the polypeptides and use of the polypeptides and polynucleotides are also provided.
    Type: Application
    Filed: June 6, 2003
    Publication date: January 25, 2007
    Applicant: The Scripps Research Institute
    Inventor: Carlos Barbas
  • Publication number: 20060257856
    Abstract: Filamentous phage comprising a matrix of cpVIII proteins encapsulating a genome encoding first and second polypeptides of an antogenously assembling receptor, such as an antibody, and a receptor comprised of the first and second polypeptides surface-integrated into the matrix via a filamentous phage coat protein membrane anchor domain fused to at least one of the polypeptides.
    Type: Application
    Filed: December 22, 2005
    Publication date: November 16, 2006
    Applicant: The Scripps Research Institute
    Inventors: Angray Kang, Carlos Barbas, Richard Lerner
  • Publication number: 20060223757
    Abstract: Zinc finger-nucleotide binding polypeptides having binding specificity for target nucleotides containing one or GNN triplets are provided. Compositions containing such polypeptides and the use of such polypeptides and compositions for regulating gene expression are also provided.
    Type: Application
    Filed: February 10, 2006
    Publication date: October 5, 2006
    Inventor: Carlos Barbas
  • Publication number: 20060211846
    Abstract: Polypeptides that contain from 2 to 12 zinc finger-nucleotide binding regions that bind to nucleotide sequences of the formula (ANN)2-12 are provided. Polynucleotides that encode such polypeptides and methods of regulating gene expression with such polypeptides and polynucleotides are also provided.
    Type: Application
    Filed: March 3, 2006
    Publication date: September 21, 2006
    Inventors: Carlos Barbas, Birgit Dreier
  • Publication number: 20060178502
    Abstract: Single chain, monomeric polypeptide gene switches are provided. The gene switches include ligand binding domains and at least one functional domain. Preferred functional domains are DNA binding domains and transcriptional regulating domains. Methods of regulating gene function using the switches are also provided.
    Type: Application
    Filed: November 15, 2005
    Publication date: August 10, 2006
    Applicant: The Scripps Research Institute
    Inventors: Carlos Barbas, Roger Beerli, Ulrich Schopfer
  • Publication number: 20060121570
    Abstract: The present invention describes methods for producing binding sites on polypeptides, and particularly for producing binding sites within the CDR regions of immunoglobulin heavy or light chains that are displayed on the surface of filamentous phage particles. The invention also describes oligonucleotides useful for preparing the binding sites, and human monoclonal antibodies produced by the present methods.
    Type: Application
    Filed: October 18, 2005
    Publication date: June 8, 2006
    Applicant: The Scripps Research Institute
    Inventors: Carlos Barbas, Richard Lerner
  • Publication number: 20060078880
    Abstract: A library of multimeric DNA binding polypeptides is provided. Preferred such polypeptides are zinc finger protein DNA binding domains. Libraries of nucleotides encoding such polypeptides, expression vectors containing such nucleotides, cells containing any of the libraries and uses of the libraries are also provided.
    Type: Application
    Filed: February 7, 2003
    Publication date: April 13, 2006
    Applicant: THE SCRIPPS RESEARCH INSTITUTE
    Inventors: Carlos Barbas, Pilar Blancafort
  • Publication number: 20050148075
    Abstract: Zinc finger-nucleotide binding polypeptides having binding specificity for target nucleotides containing one or GNN triplets are provided. Compositions containing such polypeptides and the use of such polypeptides and compositions for regulating gene expression are also provided.
    Type: Application
    Filed: August 21, 2003
    Publication date: July 7, 2005
    Applicant: The Scripps Research Institute
    Inventor: Carlos Barbas
  • Publication number: 20050084885
    Abstract: Zinc finger proteins of the Cys2His2 type represent a class of malleable DNA binding proteins which may be selected to bind diverse sequences. Typically, zinc finger proteins containing three zinc finger domains, like the murine transcription factor Zif268 and the human transcription factor Spl, bind nine contiguous base pairs (bp). To create a class of proteins which would be generally applicable to target unique sites within complex genomes, the present invention provides a polypeptide linker that fuses two three-finger proteins. Two six-fingered proteins were created and demonstrated to bind 18 contiguous bp of DNA in a sequence specific fashion. Expression of these proteins as fusions to activation or repression domains allows transcription to be specifically up or down modulated within cells. Polydactyl zinc finger proteins are broadly applicable as genome-specific transcriptional switches in gene therapy strategies and the development of novel transgenic plants and animals.
    Type: Application
    Filed: September 14, 2004
    Publication date: April 21, 2005
    Inventors: Carlos Barbas, Joel Gottesfeld, Peter Wright
  • Patent number: 6468738
    Abstract: Filamentous phage comprising a matrix of cpvIII proteins encapsulating a genome encoding first and second polypeptides of an antogenously assembling receptor, such as an antibody, and a receptor comprised of the first and second polypeptides surface-integrated into the matrix via a filamentous phage coat protein membrane anchor domain fused to at least one of the polypeptides.
    Type: Grant
    Filed: December 4, 2000
    Date of Patent: October 22, 2002
    Assignee: The Scripps Research Institute
    Inventors: Angray Kang, Carlos Barbas, Richard A. Lerner
  • Patent number: 6235469
    Abstract: Filamentous phase comprising a matrix of cpVIII proteins encapsulating a genome encoding first and second polypeptides of an antogenously assembling receptor, such as an antibody, and a receptor comprised of the first and second polypeptides surface-integrated into the matrix via a filamentous phage coat protein membrane anchor domain fused to at least one of the polypeptides.
    Type: Grant
    Filed: August 8, 1997
    Date of Patent: May 22, 2001
    Assignee: The Scripps Research Institute
    Inventors: Angray Kang, Carlos Barbas, Richard A. Lerner
  • Patent number: 5955341
    Abstract: Filamentous phage comprising a matrix of cpVIII proteins encapsulating a genome encoding first and second polypeptides of an autogenously assembling receptor, such as an antibody, and a receptor comprised of the first and second polypeptides surface-integrated into the matrix via a cpVIII membrane anchor domain fused to at least on of the polypeptides.
    Type: Grant
    Filed: February 2, 1995
    Date of Patent: September 21, 1999
    Assignee: The Scripps Research Institute
    Inventors: Angray Kang, Carlos Barbas, Richard Lerner
  • Patent number: 5759817
    Abstract: Filamentous phage comprising a matrix of cpVIII proteins encapsulating a genome encoding first and second polypeptides of an antogenously assembling receptor, such as an antibody, and a receptor comprised of the first and second polypeptides surface-integrated into the matrix via a cpVIII membrane anchor domain fused to at least one of the polypeptides with a mutagenized CDR3 region.
    Type: Grant
    Filed: October 12, 1994
    Date of Patent: June 2, 1998
    Assignee: The Scripps Research Institute
    Inventor: Carlos Barbas
  • Patent number: 5658727
    Abstract: Filamentous phage comprising a matrix of cpVIII proteins encapsulating a genome encoding first and second polypeptides of an antogenously assembling receptor, such as an antibody, and a receptor comprised of the first and second polypeptides surface-integrated into the matrix via a filamentous phage coat protein membrane anchor domain fused to at least one of the polypeptides.
    Type: Grant
    Filed: June 8, 1994
    Date of Patent: August 19, 1997
    Assignee: The Scripps Research Institute
    Inventors: Carlos Barbas, Angray Kang, Richard A. Lerner