Abstract: A novel automated filter cleaning system capable of removing contaminants clogging the filter disk without having to resort to the operator's manual operation is disclosed. The system comprises a turntable or filter magazine for holding the filter disks in a stacked condition, a first ultrasonic cleaner for applying an ultrasonic field to one side of the filter disk, a second ultrasonic cleaner for applying an ultrasonic field to the other side of the filter disk, a water injection cleaner for removing residual contaminants from the ultrasonically cleansed filter disk, a robotic carrier for transporting the filter disk from a particular station to another, and a controller for controlling the overall operation of the filter cleaning system. A method is also provided for cleaning the filter disk by a combined action of ultrasonic treatment and water injection.