Abstract: A method for increasing the yield of eicosapentaenoic acid in Schizochytrium sp., the method comprising: inoculating Schizochytrium sp. ATCC 20888 into a fermentation culture medium, fermenting same under an aerobic condition, changing the temperature when fermenting is performed to the middle of a logarithmic phase, continuing fermenting same, and controlling the dissolved oxygen (DO) value to be 2%-10% after changing the temperature, wherein changing the temperature increases the initial fermentation temperature to 32° C.-37° C. from 25° C.-30° C. EPA is produced by means of fermenting with Schizochytrium sp. ATCC 20888, the dry weight of thalli in the obtained fermentation liquor reaches 66.15 g/L, the yield of oil is 9.97 g/L, and EPA accounts for 13.33% of fatty acid.