Patents by Inventor Charit Pethiyagoda

Charit Pethiyagoda has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20090124514
    Abstract: Multiple unique selection probes are provided in a single medium. Each selection probe has a sequence that is complementary to a unique target sequence that may be present in a sample under consideration. For example, each selection probe may be complementary to a sequence that includes one of the SNPs used to genotype an organism. Single-stranded selection probes anneal or hybridize with sample sequences having the unique target sequences specified by the selection probe sequences. Sequences from the sample that do not anneal or hybridize with the selection probes are separated from the bound sequences by an appropriate technique. The bound sequences can then be freed to provide a mixture of isolated target sequences, which can be used as needed for the application at hand.
    Type: Application
    Filed: October 24, 2008
    Publication date: May 14, 2009
    Applicant: PERLEGEN SCIENCES, INC.
    Inventors: Glenn Fu, Laura Stuve, Julie Montgomery, John Sheehan, Charit Pethiyagoda, Amy Ollmann, Naiping Shen, Michael Kennemer, Andrew B. Sparks, Dennis Ballinger
  • Publication number: 20050100911
    Abstract: The invention provides several methods for reducing the complexity of a population of nucleic acids prior to performing an analysis of the nucleic acids on a nucleic acid probe array. The methods result in a subset of the initial population enriched for a desired property, or lacking nucleic acids having an undesired properly. The resulting nucleic acids in the subset are then applied to the array for various types of analysis. The methods are particularly useful for analyzing populations having a high decree of complexity, for example, chromosomal-derived DNA, or whole genomic DNA, or mRNA population. In addition, such methods allow for analysis of pooled samples.
    Type: Application
    Filed: August 6, 2003
    Publication date: May 12, 2005
    Applicant: Perlegen Sciences, Inc.
    Inventors: Nila Patil, David Cox, Charit Pethiyagoda, Andrew Sparks, Huang-Tsu Chen
  • Publication number: 20020164634
    Abstract: The invention provides several methods for reducing the complexity of a population of nucleic acids prior to performing an analysis of the nucleic acids on a nucleic acid probe array. The methods result in a subset of the initial population enriched for a desired property, or lacking nucleic acids having an undesired property. The resulting nucleic acids in the subset are then applied to the array for various types of analysis. The methods are particularly useful for analyzing populations having a high degree of complexity, for example, chromosomal-derived DNA, or whole genomic DNA, or mRNA population. In addition, such methods allow for analysis of pooled samples.
    Type: Application
    Filed: April 24, 2002
    Publication date: November 7, 2002
    Applicant: Perlegen Sciences, Inc.
    Inventors: Nila Patil, David R. Cox, Charit Pethiyagoda, Kelly A. Frazer