Patents by Inventor Charu Ramakrishnan

Charu Ramakrishnan has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11801301
    Abstract: The present disclosure provides variant light-responsive polypeptides, and nucleic acids comprising nucleotide sequences encoding the light-responsive polypeptides. The present disclosure provides methods, devices, and systems for controlling the activity of a cell expressing a variant light-responsive polypeptide of the present disclosure.
    Type: Grant
    Filed: September 14, 2016
    Date of Patent: October 31, 2023
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Karl A. Deisseroth, Andre Berndt, Soo Yeun Lee, Charu Ramakrishnan
  • Publication number: 20230096053
    Abstract: Compositions and methods are provided for genetically modifying cells to guide in situ chemical synthesis of electroactive, conductive, or insulating polymers on plasma membranes, organelle membranes, or subcellular surfaces of cells. In particular, compositions and methods are provided for genetically modifying excitable cells such as neurons, muscle cells, and endocrine cells to guide in situ chemical synthesis of polymers on the extracellular side of the plasma membrane. The subject methods can be used in various applications, for example, to assemble polymers in vivo at targeted locations to modulate electrical conduction and create new electrical conduction pathways, allow cell-type-specific neuromodulation, provide a conductive structure on cells for connection to electrodes, sensors, or other external electronic and electrochemical devices, and create a durable structure to replace damaged tissue for use in regenerative medicine.
    Type: Application
    Filed: December 4, 2020
    Publication date: March 30, 2023
    Inventors: Karl A. Deisseroth, Zhenan Bao, Jia Liu, Charu Ramakrishnan, Yoon Seok Kim, Ariane C. Tom
  • Publication number: 20230064644
    Abstract: The present disclosure provides recombinant expression vectors for modulating production of polypeptides of interest in a target cell or target cell population. Aspects of the disclosure include recombinant expression vectors having coding sequences encoding portions of a polypeptide of interest, where the coding sequences are flanked by recombinase recognition sites. Also provided are methods for using the recombinant expression vectors as well as a device for monitoring expression of the polypeptide of interest.
    Type: Application
    Filed: February 3, 2021
    Publication date: March 2, 2023
    Inventors: Karl A. Deisseroth, Charu Ramakrishnan, Yoon Seok Kim, Lief E. Fenno
  • Patent number: 11531035
    Abstract: The present disclosure provides a genetically encoded calcium indicator (GECI), nucleic acids encoding the GECI, and host cells comprising the GECI. The present disclosure also provides methods of detecting a change in the intracellular concentration of a cell expressing a GECI of the present disclosure.
    Type: Grant
    Filed: May 25, 2018
    Date of Patent: December 20, 2022
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Karl A. Deisseroth, Charu Ramakrishnan, Masatoshi Inoue
  • Publication number: 20220118271
    Abstract: The present disclosure provides light-responsive polypeptides, and nucleic acids comprising nucleotide sequences encoding the light-responsive polypeptides. The present disclosure provides methods, devices, and systems for controlling the activity of a cell expressing a light-responsive polypeptide of the present disclosure.
    Type: Application
    Filed: January 10, 2020
    Publication date: April 21, 2022
    Inventors: Karl A. Deisseroth, Yoon Kim, Hideaki Kato, Charu Ramakrishnan, Susumu Yoshizawa
  • Publication number: 20200318079
    Abstract: The present disclosure provides nucleic acid activity-dependent expression vectors and activity-dependent expression cassettes for the activity-dependent expression of an encoded polypeptide. Also provided are recombinant adenoassociated viruses (AAV) containing an expression vector comprising an activity-dependent expression cassette for the activity-dependent expression of an encoded polypeptide by cells infected with the AAV vector. The present disclosure also provides methods for the activity-dependent labeling of cells in vitro or in vivo by introducing into the cells an expression vector containing an activity-dependent regulatory sequence driving expression of a labeling polypeptide. Also provided are methods for the activity-dependent control of cells in vitro or in vivo by introducing into the cells an expression vector containing an activity-dependent regulatory sequence driving expression of a light-responsive polypeptide.
    Type: Application
    Filed: May 23, 2017
    Publication date: October 8, 2020
    Inventors: Karl A. Deisseroth, Li Ye, Charu Ramakrishnan, Kimberly R. Thompson
  • Publication number: 20200032291
    Abstract: A nucleic acid containing a dopamine receptor type 2-specific promoter (D2SP) is provided. In certain embodiments, the nucleic acid includes a dopamine receptor type 2-specific promoter (D2SP), wherein the D2SP does not include exon 1 of a D2 receptor gene, wherein the D2SP comprises a Kozak sequence, and wherein the D2SP includes a nucleotide sequence having at least 95% sequence identity to the nucleotide sequence set forth in SEQ ID NO: 1. Also provided are expression vectors, genetically modified host cells and kits that include the subject nucleic acid.
    Type: Application
    Filed: September 27, 2019
    Publication date: January 30, 2020
    Inventors: Karl A. Deisseroth, Charu Ramakrishnan, Kelly Zalocusky
  • Publication number: 20200030446
    Abstract: Aspects of the disclosure include compositions, devices, systems and methods for optogenetic modulation of action potentials in target cells. The subject devices include light-generating devices, control devices, and delivery devices for delivering light-responsive polypeptides, or nucleic acids encoding same, to target cells. The subject compositions and systems include light-activated polypeptides, nucleic acids comprising nucleotide sequences encoding these polypeptides, as well as expression systems that facilitate expression of these polypeptides in target cells. Also provided are methods of using the subject devices and systems to optogenetically manipulate action potentials in target cells, e.g., to treat a neurological or psychiatric condition in a human or animal subject.
    Type: Application
    Filed: October 11, 2019
    Publication date: January 30, 2020
    Inventors: Karl A. Deisseroth, Soo Yeun Lee, Charu Ramakrishnan, Andre Berndt
  • Patent number: 10478499
    Abstract: Aspects of the disclosure include compositions, devices, systems and methods for optogenetic modulation of action potentials in target cells. The subject devices include light-generating devices, control devices, and delivery devices for delivering light-responsive polypeptides, or nucleic acids encoding same, to target cells. The subject compositions and systems include light-activated polypeptides, nucleic acids comprising nucleotide sequences encoding these polypeptides, as well as expression systems that facilitate expression of these polypeptides in target cells. Also provided are methods of using the subject devices and systems to optogenetically manipulate action potentials in target cells, e.g., to treat a neurological or psychiatric condition in a human or animal subject.
    Type: Grant
    Filed: August 7, 2018
    Date of Patent: November 19, 2019
    Assignee: The Board of the Trustees of the Leland Stanford Junior University
    Inventors: Karl A. Deisseroth, Soo Yeun Lee, Charu Ramakrishnan, Andre Berndt
  • Patent number: 10435709
    Abstract: A nucleic acid containing a dopamine receptor type 2-specific promoter (D2SP) is provided. In certain embodiments, the nucleic acid includes a dopamine receptor type 2-specific promoter (D2SP), wherein the D2SP does not include exon 1 of a D2 receptor gene, wherein the D2SP comprises a Kozak sequence, and wherein the D2SP includes a nucleotide sequence having at least 95% sequence identity to the nucleotide sequence set forth in SEQ ID NO: 1. Also provided are expression vectors, genetically modified host cells and kits that include the subject nucleic acid.
    Type: Grant
    Filed: December 3, 2015
    Date of Patent: October 8, 2019
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Karl A. Deisseroth, Charu Ramakrishnan, Kelly Zalocusky
  • Publication number: 20180372762
    Abstract: The present disclosure provides a genetically encoded calcium indicator (GECI), nucleic acids encoding the GECI, and host cells comprising the GECI. The present disclosure also provides methods of detecting a change in the intracellular concentration of a cell expressing a GECI of the present disclosure.
    Type: Application
    Filed: May 25, 2018
    Publication date: December 27, 2018
    Inventors: Karl A. Deisseroth, Charu Ramakrishnan, Masatoshi Inoue
  • Publication number: 20180344851
    Abstract: Aspects of the disclosure include compositions, devices, systems and methods for optogenetic modulation of action potentials in target cells. The subject devices include light-generating devices, control devices, and delivery devices for delivering light-responsive polypeptides, or nucleic acids encoding same, to target cells. The subject compositions and systems include light-activated polypeptides, nucleic acids comprising nucleotide sequences encoding these polypeptides, as well as expression systems that facilitate expression of these polypeptides in target cells. Also provided are methods of using the subject devices and systems to optogenetically manipulate action potentials in target cells, e.g., to treat a neurological or psychiatric condition in a human or animal subject.
    Type: Application
    Filed: August 7, 2018
    Publication date: December 6, 2018
    Inventors: Karl A. Deisseroth, Soo Yeun Lee, Charu Ramakrishnan, Andre Berndt
  • Publication number: 20180250402
    Abstract: The present disclosure provides variant light-responsive polypeptides, and nucleic acids comprising nucleotide sequences encoding the light-responsive polypeptides. The present disclosure provides methods, devices, and systems for controlling the activity of a cell expressing a variant light-responsive polypeptide of the present disclosure.
    Type: Application
    Filed: September 14, 2016
    Publication date: September 6, 2018
    Applicant: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Karl A. Deisseroth, Andre Berndt, Soo Yeun Lee, Charu Ramakrishnan
  • Patent number: 10052383
    Abstract: Aspects of the disclosure include compositions, devices, systems and methods for optogenetic modulation of action potentials in target cells. The subject devices include light-generating devices, control devices, and delivery devices for delivering light-responsive polypeptides, or nucleic acids encoding same, to target cells. The subject compositions and systems include light-activated polypeptides, nucleic acids comprising nucleotide sequences encoding these polypeptides, as well as expression systems that facilitate expression of these polypeptides in target cells. Also provided are methods of using the subject devices and systems to optogenetically manipulate action potentials in target cells, e.g., to treat a neurological or psychiatric condition in a human or animal subject.
    Type: Grant
    Filed: March 27, 2015
    Date of Patent: August 21, 2018
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Karl A. Deisseroth, Soo Yeun Lee, Charu Ramakrishnan, Andre Berndt
  • Publication number: 20170327841
    Abstract: A nucleic acid containing a dopamine receptor type 2-specific promoter (D2SP) is provided. In certain embodiments, the nucleic acid includes a dopamine receptor type 2-specific promoter (D2SP), wherein the D2SP does not include exon 1 of a D2 receptor gene, wherein the D2SP comprises a Kozak sequence, and wherein the D2SP includes a nucleotide sequence having at least 95% sequence identity to the nucleotide sequence set forth in SEQ ID NO: 1. Also provided are expression vectors, genetically modified host cells and kits that include the subject nucleic acid.
    Type: Application
    Filed: December 3, 2015
    Publication date: November 16, 2017
    Inventors: Karl A. Deisseroth, Charu Ramakrishnan, Kelly Zalocusky
  • Publication number: 20170095556
    Abstract: Aspects of the disclosure include compositions, devices, systems and methods for optogenetic modulation of action potentials in target cells. The subject devices include light-generating devices, control devices, and delivery devices for delivering light-responsive polypeptides, or nucleic acids encoding same, to target cells. The subject compositions and systems include light-activated polypeptides, nucleic acids comprising nucleotide sequences encoding these polypeptides, as well as expression systems that facilitate expression of these polypeptides in target cells. Also provided are methods of using the subject devices and systems to optogenetically manipulate action potentials in target cells, e.g., to treat a neurological or psychiatric condition in a human or animal subject.
    Type: Application
    Filed: March 27, 2015
    Publication date: April 6, 2017
    Inventors: Karl A. Deisseroth, Soo Yeun Lee, Charu Ramakrishnan, Andre Berndt