Abstract: A system and method are provided for auditing the inventory within an automated warehouse utilizing RFID technology. The system and method enable real-time tracking and monitoring of inventory and load units as they travel through and are stored in the warehouse. The system may require only a single RFID reader coupled with an automated shuttle for traversing a majority of the warehouse storage system to read, recognize, and audit the inventory as stored in load units stored in the system. The system may utilize multiple RFID readers throughout the warehouse to provide ample coverage, enabling real-time, whole warehouse inventory tracking. The system and method of the present invention contemplate both readily available RFID technologies, as well as advanced or improved RFID technologies having greater detection range, larger information storage capabilities, and the ability to determine precise spatial location of tags relative a reader.