Patents by Inventor Daniel B. WEAVER

Daniel B. WEAVER has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20210174907
    Abstract: BAYSIC (BAYesian System for Integrated Combination) combines sets of genomic and other biological data features to optimize selected data feature attributes, for example, detecting genome variants including single nucleotide variants (SNVs) and small insertion/deletions in genomes. The present disclosure presents one possible embodiment employing BAYSIC to combine single nucleotide variants detected by several distinct variant calling methods into an integrated SNV call set that is more accurate than any single SNV calling method or any ad hoc method of combining call sets. BAYSIC is a, tested and validated method using unsupervised machine learning, employing Bayesian latent class inference to combine variant sets produced by different packages.
    Type: Application
    Filed: July 10, 2020
    Publication date: June 10, 2021
    Inventors: Aaron J. MACKEY, Brandi CANTAREL, Justin REESE, Daniel B. WEAVER
  • Publication number: 20190333604
    Abstract: The present disclosure presents methods, systems, and devices for dentifying new molecules directly from biological sequence information, with at least one of a desired bioactivity profile, functional attribute, biochemical reactivity, biological impact, pharmacological characteristic or therapeutic effect. The present disclosure further includes analyzing, at the processor, data features of biological sequence information and other data sources, including a feature-definition set by processing, using one or more bioinformatic techniques, computational algorithms, or methods of statistical machine learning, data sources relating to biological or chemical molecules, including biomolecules, including but not limited to peptides, having desired physical or chemical characteristics, bioactivities, functional attributes, biological impacts, pharmacologic properties or therapeutic effects.
    Type: Application
    Filed: March 4, 2019
    Publication date: October 31, 2019
    Applicant: GENFORMATIC, LLC
    Inventors: Daniel B. WEAVER, Justin T. REESE
  • Patent number: 10223499
    Abstract: The present disclosure presents methods, systems, and devices for identifying new molecules directly from biological sequence information, with at least one of a desired bioactivity profile, functional attribute, biochemical reactivity, biological impact, pharmacological characteristic or therapeutic effect. The present disclosure further includes analyzing, at the processor, data features of biological sequence information and other data sources, including a feature-definition set by processing, using one or more bioinformatic techniques, computational algorithms, or methods of statistical machine learning, data sources relating to biological or chemical molecules, including biomolecules, including but not limited to peptides, having desired physical or chemical characteristics, bioactivities, functional attributes, biological impacts, pharmacologic properties or therapeutic effects.
    Type: Grant
    Filed: November 6, 2015
    Date of Patent: March 5, 2019
    Assignee: GENFORMATIC, LLC
    Inventors: Daniel B. Weaver, Justin T. Reese
  • Publication number: 20160063180
    Abstract: The present disclosure presents methods, systems, and devices for dentifying new molecules directly from biological sequence information, with at least one of a desired bioactivity profile, functional attribute, biochemical reactivity, biological impact, pharmacological characteristic or therapeutic effect. The present disclosure further includes analyzing, at the processor, data features of biological sequence information and other data sources, including a feature-definition set by processing, using one or more bioinformatic techniques, computational algorithms, or methods of statistical machine learning, data sources relating to biological or chemical molecules, including biomolecules, including but not limited to peptides, having desired physical or chemical characteristics, bioactivities, functional attributes, biological impacts, pharmacologic properties or therapeutic effects.
    Type: Application
    Filed: November 6, 2015
    Publication date: March 3, 2016
    Inventors: Daniel B. WEAVER, Justin T. REESE
  • Publication number: 20140143188
    Abstract: BAYSIC (BAYesian System for Integrated Combination) combines sets of genomic and other biological data features to optimize selected data feature attributes, for example, detecting genome variants including single nucleotide variants (SNVs) and small insertion/deletions in genomes. The present disclosure presents one possible embodiment employing BAYSIC to combine single nucleotide variants detected by several distinct variant calling methods into an integrated SNV call set that is more accurate than any single SNV calling method or any ad hoc method of combining call sets. BAYSIC is a, tested and validated method using unsupervised machine learning, employing Bayesian latent class inference to combine variant sets produced by different packages.
    Type: Application
    Filed: November 18, 2013
    Publication date: May 22, 2014
    Applicant: GENFORMATIC, LLC
    Inventors: Aaron J. MACKEY, Brandi CANTAREL, Justin REESE, Daniel B. WEAVER
  • Publication number: 20130252280
    Abstract: The present disclosure presents methods, systems, and devices for dentifying new molecules directly from biological sequence information, with at least one of a desired bioactivity profile, functional attribute, biochemical reactivity, biological impact, pharmacological characteristic or therapeutic effect. The present disclosure further includes analyzing, at the processor, data features of biological sequence information and other data sources, including a feature-definition set by processing, using one or more bioinformatic techniques, computational algorithms, or methods of statistical machine learning, data sources relating to biological or chemical molecules, including biomolecules, including but not limited to peptides, having desired physical or chemical characteristics, bioactivities, functional attributes, biological impacts, pharmacologic properties or therapeutic effects.
    Type: Application
    Filed: March 7, 2013
    Publication date: September 26, 2013
    Applicant: GENFORMATIC, LLC
    Inventors: Daniel B. WEAVER, Justin T. REESE