Patents by Inventor Daniel Burgess

Daniel Burgess has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 12624393
    Abstract: In one aspect of the present disclosure is a targeted sequencing workflow where an input sample comprising a sufficient quantity of genomic material is provided such minimal or no amplification cycles are utilized prior to sequencing.
    Type: Grant
    Filed: April 6, 2023
    Date of Patent: May 12, 2026
    Assignees: Roche Sequencing Solutions, Inc., Ventana Medical Systems, Inc.
    Inventors: Nelson R Alexander, Daniel Burgess, Heidi J Rosenbaum, Stacey Stanislaw
  • Publication number: 20260108887
    Abstract: The present disclosure is directed to automated systems including a microfluidic chip having one or more independently operable processing conduits. In some embodiments, the automated systems are suitable for use in sample cleanup and/or target enrichment processes, such as sample cleanup and/or target enrichment processes conducted prior to sequencing.
    Type: Application
    Filed: July 25, 2025
    Publication date: April 23, 2026
    Inventors: Yann Astier, Daniel Burgess, Ulrich Schlecht, Jaeyoung Yang
  • Publication number: 20250243477
    Abstract: The present disclosure provides a method for enrichment of at least one target nucleic acid in a library of nucleic acids. A first oligonucleotide is hybridized to a target nucleic acid in library of nucleic acids having first and second adapters. The hybridized first oligonucleotide is extended with a first polymerase, thereby producing a first primer extension complex including the target nucleic acid and the extended first oligonucleotide. The first primer extension complex is captured, enriched relative to the library of nucleic acids, and a second oligonucleotide is hybridized to the target nucleic acid. The hybridized second oligonucleotide is extended with a second polymerase, thereby producing a second primer extension complex including the target nucleic acid and the extended second oligonucleotide and further liberating the extended first oligonucleotide from the first primer extension complex.
    Type: Application
    Filed: February 24, 2025
    Publication date: July 31, 2025
    Inventors: Daniel Burgess, Brian Christopher Godwin, Alexander Lovejoy, Bronwen Miller, Jo-Anne Elizabeth Penkler, Joseph Platzer, Martin Ranik
  • Patent number: 12264315
    Abstract: The present disclosure provides a method for enrichment of at least one target nucleic acid in a library of nucleic acids. A first oligonucleotide is hybridized to a target nucleic acid in library of nucleic acids having first and second adapters. The hybridized first oligonucleotide is extended with a first polymerase, thereby producing a first primer extension complex including the target nucleic acid and the extended first oligonucleotide. The first primer extension complex is captured, enriched relative to the library of nucleic acids, and a second oligonucleotide is hybridized to the target nucleic acid. The hybridized second oligonucleotide is extended with a second polymerase, thereby producing a second primer extension complex including the target nucleic acid and the extended second oligonucleotide, and further liberating the extended first oligonucleotide from the first primer extension complex.
    Type: Grant
    Filed: August 15, 2019
    Date of Patent: April 1, 2025
    Assignees: Roche Sequencing Solutions, Inc., Kapa Biosystems, Inc.
    Inventors: Daniel Burgess, Brian Christopher Godwin, Alexander Lovejoy, Bronwen Miller, Jo-Anne Elizabeth Penkler, Joseph Platzer, Martin Ranik
  • Publication number: 20250073420
    Abstract: Medical device packaging, medical device packaging assemblies, and methods for preparing and packaging medical devices. An example medical device packaging assembly may include an external package, a carrier tube disposed within the external package, the carrier tube including one or more clips configured to hold the carrier tube in a predetermined configuration, a medical device disposed within the carrier tube, and a moisture or oxygen scavenging packet releasably coupled to one of the one or more clips. The moisture or oxygen scavenging packet may comprise an outer barrier pouch, an inner container disposed within the outer barrier pouch, and a desiccant and/or an oxygen scavenging material disposed within the inner container.
    Type: Application
    Filed: August 22, 2024
    Publication date: March 6, 2025
    Applicant: Boston Scientific Scimed, Inc.
    Inventors: Frank Haven Matti, Robert Boyd Ewart, Daniel Burgess, Mark Harding
  • Publication number: 20240279732
    Abstract: The present disclosure is directed to compositions, kits, and methods of and methods which facilitate the amplification of a unidirectional primer extension product. In particular, the compositions, kits, and methods described herein facilitate the amplification of a unidirectional primer extension product without the need to incorporate a second polymerase chain reaction primer binding target on a distal end of an initial single-stranded nucleic acid molecule primer extension product.
    Type: Application
    Filed: September 12, 2023
    Publication date: August 22, 2024
    Inventors: Daniel Burgess, Keynttisha Jefferson
  • Publication number: 20240158780
    Abstract: The present disclosure provides a method for enrichment of at least one target nucleic acid in a library of nucleic acids. A first oligonucleotide is hybridized to a target nucleic acid in library of nucleic acids having first and second adapters. The hybridized first oligonucleotide is extended with a first polymerase, thereby producing a first primer extension complex including the target nucleic acid and the extended first oligonucleotide. The first primer extension complex is captured, enriched relative to the library of nucleic acids, and a second oligonucleotide is hybridized to the target nucleic acid. The hybridized second oligonucleotide is extended with a second polymerase, thereby producing a second primer extension complex including the target nucleic acid and the extended second oligonucleotide, and further liberating the extended first oligonucleotide from the first primer extension complex.
    Type: Application
    Filed: August 22, 2023
    Publication date: May 16, 2024
    Inventors: Daniel Burgess, Brian Christopher Godwin, Alexander Lovejoy, Bronwen Miller, Jo-Anne Elizabeth Penkler, Joseph Platzer
  • Patent number: 11773388
    Abstract: The present disclosure provides a method for enrichment of at least one target nucleic acid in a library of nucleic acids. A first oligonucleotide is hybridized to a target nucleic acid in library of nucleic acids having first and second adapters. The hybridized first oligonucleotide is extended with a first polymerase, thereby producing a first primer extension complex including the target nucleic acid and the extended first oligonucleotide. The first primer extension complex is captured, enriched relative to the library of nucleic acids, and a second oligonucleotide is hybridized to the target nucleic acid. The hybridized second oligonucleotide is extended with a second polymerase, thereby producing a second primer extension complex including the target nucleic acid and the extended second oligonucleotide, and further liberating the extended first oligonucleotide from the first primer extension complex.
    Type: Grant
    Filed: June 22, 2020
    Date of Patent: October 3, 2023
    Assignees: Roche Sequencing Solutions, Inc., Kapa Biosystems, Inc.
    Inventors: Daniel Burgess, Brian Christopher Godwin, Alexander Lovejoy, Bronwen Miller, Jo-Anne Elizabeth Penkler, Joseph Platzer
  • Publication number: 20230250476
    Abstract: In one aspect of the present disclosure is a targeted sequencing workflow where an input sample comprising a sufficient quantity of genomic material is provided such minimal or no amplification cycles are utilized prior to sequencing.
    Type: Application
    Filed: April 6, 2023
    Publication date: August 10, 2023
    Inventors: Nelson R. Alexander, Daniel Burgess, Heidi J. Rosenbaum, Stacey Stanislaw
  • Patent number: 11649492
    Abstract: In one aspect of the present disclosure is a targeted sequencing workflow where an input sample comprising a sufficient quantity of genomic material is provided such minimal or no amplification cycles are utilized prior to sequencing.
    Type: Grant
    Filed: July 13, 2018
    Date of Patent: May 16, 2023
    Assignees: Roche Sequencing Solutions, Inc., Ventana Medical Systems, Inc.
    Inventors: Nelson R Alexander, Daniel Burgess, Heidi J Rosenbaum, Stacey Stanislaw
  • Publication number: 20230039014
    Abstract: The present disclosure is directed to automated systems including a microfluidic chip having one or more independently operable processing conduits. In some embodiments, the automated systems are suitable for use in sample cleanup and/or target enrichment processes, such as sample cleanup and/or target enrichment processes conducted prior to sequencing.
    Type: Application
    Filed: January 21, 2021
    Publication date: February 9, 2023
    Inventors: Yann Astier, Daniel Burgess, Ulrich Schlecht, Jaeyoung Yang
  • Patent number: 11155853
    Abstract: The present disclosure provides a system and method for depleting target nucleic acids from a nucleic acid sample. In one aspect, a kit according to the present disclosure includes a plurality of DNA probes. Each of the DNA probes is hybridizable to form a heteroduplex with at least one of a plurality of target RNA transcripts in a nucleic acid sample. The number of unique target RNA transcripts hybridized by the plurality of DNA probes is at least three. The kit further includes an enzyme having RNA-DNA hybrid ribonucleotidohydrolase activity, where degrades at least the RNA portion of the heteroduplex.
    Type: Grant
    Filed: October 3, 2019
    Date of Patent: October 26, 2021
    Assignee: Roche Sequencing Solutions, Inc.
    Inventors: Venera Bouriakov, Daniel Burgess
  • Publication number: 20200392483
    Abstract: The present disclosure provides a method for enrichment of at least one target nucleic acid in a library of nucleic acids. A first oligonucleotide is hybridized to a target nucleic acid in library of nucleic acids having first and second adapters. The hybridized first oligonucleotide is extended with a first polymerase, thereby producing a first primer extension complex including the target nucleic acid and the extended first oligonucleotide. The first primer extension complex is captured, enriched relative to the library of nucleic acids, and a second oligonucleotide is hybridized to the target nucleic acid. The hybridized second oligonucleotide is extended with a second polymerase, thereby producing a second primer extension complex including the target nucleic acid and the extended second oligonucleotide, and further liberating the extended first oligonucleotide from the first primer extension complex.
    Type: Application
    Filed: June 22, 2020
    Publication date: December 17, 2020
    Inventors: Daniel Burgess, Brian Christopher Godwin, Alexander Lovejoy, Bronwen Miller, Jo-Anne Elizabeth Penkler, Joseph Platzer
  • Patent number: 10820959
    Abstract: A system for charging an onboard battery of a medical device prior to use of the medical device may include a package configured to accommodate the medical device therein. A power source may be disposed relative to the package and may be capable of charging the onboard battery of the medical device prior to use of the medical device. The system may be capable of being subjected to a sterilization process with the power source disposed within the second cavity. In some instances, the power source is uncharged during sterilization. In some cases, the power source is encapsulated or otherwise sealed during sterilization.
    Type: Grant
    Filed: November 15, 2019
    Date of Patent: November 3, 2020
    Assignee: BOSTON SCIENTIFIC SCIMED, INC
    Inventors: Jan Weber, Daniel Burgess, Kathryn A. Johnson, James M. Peck
  • Patent number: D1105370
    Type: Grant
    Filed: October 25, 2023
    Date of Patent: December 9, 2025
    Inventors: Amy Bartlett, Daniel Burgess
  • Patent number: D1112646
    Type: Grant
    Filed: October 25, 2023
    Date of Patent: February 10, 2026
    Assignee: Kast Concrete Basins Ltd
    Inventors: Amy Bartlett, Daniel Burgess
  • Patent number: D1125486
    Type: Grant
    Filed: October 25, 2024
    Date of Patent: May 5, 2026
    Assignee: Kast Concrete Basins Ltd.
    Inventors: Amy Bartlett, Daniel Burgess
  • Patent number: D1130713
    Type: Grant
    Filed: October 25, 2024
    Date of Patent: June 16, 2026
    Assignee: Kast Concrete Basins Ltd
    Inventors: Amy Bartlett, Daniel Burgess
  • Patent number: D1130714
    Type: Grant
    Filed: October 25, 2024
    Date of Patent: June 16, 2026
    Assignee: Kast Concrete Basins Ltd
    Inventors: Amy Bartlett, Daniel Burgess
  • Patent number: D1133119
    Type: Grant
    Filed: November 12, 2024
    Date of Patent: July 7, 2026
    Assignee: Kast Concrete Basins Ltd
    Inventors: Amy Bartlett, Daniel Burgess