Abstract: Embodiments are directed to a computer-implemented method that includes using a processor system to encode binary risk factor variables, genotypic risk factor variables, and continuous risk factor variables. The processor system is further used to adversarially train a multivariate Gaussian (MVG) generative model to generate synthetic versions of the binary risk factor variables, synthetic versions of the genotypic risk factor variables, and synthetic versions of the continuous risk factor variables.

Abstract: A method, computer system, and a computer program product for biomarker identification is provided. The present invention may include generating a plurality of higher-order joint cumulants based on an input data matrix. The present invention may include identifying one or more significant higher-order joint cumulant groups from the plurality of higher-order joint cumulants. The present invention may include embedding the one or more significant higher-order joint cumulant groups into a lower dimensional network. The present invention may include identifying one or more biomarkers.

Abstract: Embodiments of the invention include systems and methods for protecting study participant data for aggregate analysis. Aspects include sending a broker encryption key to a plurality of subjects. Aspects also include receiving double-encrypted subject data from the plurality of subjects. Aspects also include decrypting the double-encrypted subject data with a broker decryption key to generate single-encrypted subject data for the plurality of subjects. Aspects also include aggregating the single-encrypted subject data for the plurality of subjects to generate an aggregated single-homomorphically encrypted data set. Aspects also include including a plurality of random factors in the aggregated single-encrypted data set. Aspects also include sending the aggregated single-homomorphically encrypted data set to a researcher.

Abstract: Embodiments of the present invention are directed to methods for adapting machine learning, redescription, and computational homology techniques to the identification of pathogenic pathways. A non-limiting example of the computer-implemented method includes receiving genetic and biological data and generating a data matrix based on the data. The data matrix can include one or more features, and each feature can be associated with a known feature value. A collection of sets of features representing pathways, genes, or a genetic combination of genotype values can be determined. The method also includes determining a first prediction for a feature value of a selected feature to be predicted in the collection, permuting one or more rows of the data matrix, and recalculating a second prediction for the feature value based on the permutation. A prediction score can be determined based on the first prediction, the second prediction, and a known feature value.

Abstract: Embodiments of the invention include systems and methods for protecting study participant data for aggregate analysis. Aspects include sending a broker encryption key to a plurality of subjects. Aspects also include receiving double-encrypted subject data from the plurality of subjects. Aspects also include decrypting the double-encrypted subject data with a broker decryption key to generate single-encrypted subject data for the plurality of subjects. Aspects also include aggregating the single-encrypted subject data for the plurality of subjects to generate an aggregated single-homomorphically encrypted data set. Aspects also include including a plurality of random factors in the aggregated single-encrypted data set. Aspects also include sending the aggregated single-homomorphically encrypted data set to a researcher.

Abstract: A computer-based method and system describes molecules in a most fundamental and compact way using a set of attributes of the molecule derived from data representing the atomic structure and atomic charge of the molecule. The attributes include the shape of the molecule as defined by the moment of inertia of the molecule, the charge distribution of the molecule as defined by a novel representation of molecular quadrupole, and/or attributes that represent the relationship of the shape to the charge distribution of the molecule. A set of these physical attributes are represented by a set of descriptors. The set of descriptors may be used for molecular matching and activity prediction, as well as in 3D-QSAR analysis.