Patents by Inventor Daniel J. Shaffer

Daniel J. Shaffer has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10632444
    Abstract: A method for processing a biological material sample includes dispensing a sample into wells of an array tape from a sample plate, dispensing a reagent into the wells of the array tape from a reagent plate, and sealing the sample and the reagent in the array tape. The method further includes cooling the array tape and detecting biological material in the wells of the array tape.
    Type: Grant
    Filed: January 13, 2014
    Date of Patent: April 28, 2020
    Assignee: DOUGLAS SCIENTIFIC, LLC
    Inventors: Mark Whalen, Charles Gervais, Anthony Sanborn, Andrew Haug, Darren Cook, Satish Rai, Hans A. Mische, Stephen A. Judice, Daniel J. Shaffer
  • Publication number: 20150352512
    Abstract: A method for processing a biological material sample includes dispensing a sample into wells of an array tape from a sample plate, dispensing a reagent into the wells of the array tape from a reagent plate, and sealing the sample and the reagent in the array tape. The method further includes cooling the array tape and detecting biological material in the wells of the array tape.
    Type: Application
    Filed: January 13, 2014
    Publication date: December 10, 2015
    Applicant: Douglas Scientfic, LLC
    Inventors: Mark Whalen, Charles Gervais, Anthony Sanborn, Andrew Haug, Darren Cook, Satish Rai, Hans A. Mische, Stephen A. Judice, Daniel J. Shaffer
  • Publication number: 20120220478
    Abstract: The invention relates to methods and biomarkers for assessing a subject's risk for a disease, such as cancer, an autoimmune disease or a neurological disease. In particular, the invention provides methods and biomarkers for creating exon copy number variation (ECNV) profiles, and determining disease risk according to the subject's ECNV profiles.
    Type: Application
    Filed: July 20, 2010
    Publication date: August 30, 2012
    Applicant: Bar Harbor Biotechnology, Inc.
    Inventor: Daniel J. Shaffer
  • Patent number: 7881873
    Abstract: Systems and methods for performing rapid genomic DNA analysis of samples, such as control samples and experimental samples. In one aspect, the system makes use of genomic DNA input, rather than gene expression input such as mRNA and/or cDNA associated with mRNA. The systems and methods perform statistical analyses on data generated from the samples to determine which DNA sequences in an identified set of DNA sequences have a basis of variation in an experimental sample when compared to a control sample, and additionally provide a quantitative measure of this variation. The quantitative measure may be based on metrics such as copy number and/or fold-change. The systems and methods employ this statistical framework in DNA-based evaluation settings, including the evaluation/diagnosis of a pathological condition such as cancer or transgenic analysis of transgenic plants and animals.
    Type: Grant
    Filed: January 27, 2006
    Date of Patent: February 1, 2011
    Assignee: The Jackson Laboratory
    Inventors: Shreeram Akilesh, Kevin D. Mills, Derry Charles Roopenian, Daniel J. Shaffer
  • Patent number: 7822556
    Abstract: Methods and applications of Global Patter Recognition (GPR), including a system for analyzing the results of real-time polymerase chain reaction (RT-PCR) experiments employing micro-titer and/or microarray plates and robotic plate readers is described. The system employs a set of self-normalizing housekeeping primers or oligonucleotides on the plates/arrays and an algorithmic approach to normalizing expression data from all primers on the plate based on the reaction products of several of the self-normalizing gene primers oligonucleotides. Normalization is accomplished using simplex reactions involving these self-normalizing primers/oligonucleotides; the normalization parameters are then useable across all control and experimental reactions of the plate/array. A ranked list of genes whose amount of change is statistically significant can be determined. The accuracy of this list is enhanced by the data normalization aspect of the system. Other applications of GPR are also disclosed herein.
    Type: Grant
    Filed: July 29, 2009
    Date of Patent: October 26, 2010
    Assignee: The Jackson Laboratory
    Inventors: Shreeram Akilesh, Derry Roopenian, Daniel J. Shaffer
  • Publication number: 20100023272
    Abstract: Methods and applications of Global Patter Recognition (GPR), including a system for analyzing the results of real-time polymerase chain reaction (RT-PCR) experiments employing micro-titer and/or microarray plates and robotic plate readers is described. The system employs a set of self-normalizing housekeeping primers or oligonucleotides on the plates/arrays and an algorithmic approach to normalizing expression data from all primers on the plate based on the reaction products of several of the self-normalizing gene primers oligonucleotides. Normalization is accomplished using simplex reactions involving these self-normalizing primers/oligonucleotides; the normalization parameters are then useable across all control and experimental reactions of the plate/array. A ranked list of genes whose amount of change is statistically significant can be determined. The accuracy of this list is enhanced by the data normalization aspect of the system. Other applications of GPR are also disclosed herein.
    Type: Application
    Filed: July 29, 2009
    Publication date: January 28, 2010
    Applicant: The Jackson Laboratory
    Inventors: Shreeram Akilesh, Derry Roopenian, Daniel J. Shaffer
  • Publication number: 20020033466
    Abstract: A method of preparing a stable firefighting foam composition is disclosed. The method comprises combining effective amounts of a) the product of water and an alkali metal alkyl sulfate, followed by b) a fluorinated polymer, to form a final, stable mixture of materials, the foam composition being distributable on a fire.
    Type: Application
    Filed: January 11, 2001
    Publication date: March 21, 2002
    Inventors: Daniel J. Shaffer, Robert E. Gensemer
  • Publication number: 20020030176
    Abstract: A composition that produces a film forming foam for firefighting is disclosed. The composition comprises an amount, effective for the intended purpose, of a biodegradable mixture of an alkali metal sulfate, a fluorinated polymer, propylene glycol and water.
    Type: Application
    Filed: January 11, 2001
    Publication date: March 14, 2002
    Inventors: Daniel J. Shaffer, Robert E. Gensemer
  • Patent number: D1016059
    Type: Grant
    Filed: June 17, 2022
    Date of Patent: February 27, 2024
    Assignee: Apple Inc.
    Inventors: Jody Akana, Bartley K. Andre, Shota Aoyagi, Anthony Michael Ashcroft, Jeremy Bataillou, Daniel J. Coster, Daniele De Iuliis, M. Evans Hankey, Julian Hoenig, Richard P. Howarth, Jonathan P. Ive, Duncan Robert Kerr, Marc A. Newson, Matthew Dean Rohrbach, Peter Russell-Clarke, Benjamin Andrew Shaffer, Mikael Silvanto, Christopher J. Stringer, Eugene Antony Whang, Rico Zörkendörfer
  • Patent number: D1019449
    Type: Grant
    Filed: May 27, 2020
    Date of Patent: March 26, 2024
    Assignee: Apple Inc.
    Inventors: Jody Akana, Molly Anderson, Bartley K. Andre, Shota Aoyagi, Anthony Michael Ashcroft, Jeremy Bataillou, Daniel J. Coster, Daniele De Iuliis, M. Evans Hankey, Julian Hoenig, Richard P. Howarth, Jonathan P. Ive, Duncan Robert Kerr, Marc A. Newson, Matthew Dean Rohrbach, Peter Russell-Clarke, Benjamin Andrew Shaffer, Mikael Silvanto, Christopher J. Stringer, Eugene Antony Whang, Rico Zörkendörfer
  • Patent number: D1021892
    Type: Grant
    Filed: November 25, 2020
    Date of Patent: April 9, 2024
    Assignee: Apple Inc.
    Inventors: Jody Akana, Bartley K. Andre, Shota Aoyagi, Anthony Michael Ashcroft, Jeremy Bataillou, Daniel J. Coster, Daniele De Iuliis, M. Evans Hankey, Julian Hoenig, Richard P. Howarth, Jonathan P. Ive, Duncan Robert Kerr, Scott A. Myers, David A. Pakula, Rasamy Phouthavong, Matthew Dean Rohrbach, Peter Russell-Clarke, Benjamin Andrew Shaffer, Ashutosh Y. Shukla, Mikael Silvanto, Christopher J. Stringer, Eugene Antony Whang, Rico Zörkendörfer
  • Patent number: D1022692
    Type: Grant
    Filed: June 5, 2020
    Date of Patent: April 16, 2024
    Assignee: Apple Inc.
    Inventors: Jody Akana, Bartley K. Andre, Shota Aoyagi, Anthony Michael Ashcroft, Jeremy Bataillou, Daniel J. Coster, Daniele De Iuliis, M. Evans Hankey, Julian Hoenig, Richard P. Howarth, Jonathan P. Ive, Duncan Robert Kerr, Matthew Dean Rohrbach, Peter Russell-Clarke, Benjamin Andrew Shaffer, Mikael Silvanto, Christopher J. Stringer, Eugene Antony Whang, Rico Zörkendörfer