Patents by Inventor Daniel R. Richards
Daniel R. Richards has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Publication number: 20200279620Abstract: Disclosed herein are system, method, and computer program product embodiments for building a community database of allele counts. An embodiment operates by receiving human variant datasets derived from samples generated by distinct users, wherein the users consented to share pooled variant observations with other users; determining that a plurality of variant observations meet the inclusion criteria for a pool; and calculating one or more anonymized allele statistics from the pool.Type: ApplicationFiled: May 18, 2020Publication date: September 3, 2020Applicants: QIAGEN Redwood City, Inc, QIAGEN GmbHInventors: Douglas E. Bassett, JR., Daniel R. Richards, Peer M. Schatz
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Publication number: 20200279618Abstract: Disclosed herein are system, method, and computer program product embodiments for aiding in the interpretation of variants observed in clinical sequencing data. An embodiment operates by receiving clinical trial enrollment criteria from a user, including but not limited to genetic targeting criteria; searching a knowledge base of patient test information received from a plurality of independent entities for patients that match the clinical trial enrollment criteria; and providing to the user search results for consented patients that match the clinical trial enrollment criteria.Type: ApplicationFiled: May 18, 2020Publication date: September 3, 2020Applicants: QIAGEN Redwood City, Inc., QIAGEN GmbHInventors: Douglas E. BASSETT, JR., Daniel R. Richards, Peer M. Schatz
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Patent number: 10665328Abstract: Disclosed herein are system, method, and computer program product embodiments for aiding in the interpretation of variants observed in clinical sequencing data. An embodiment operates by receiving clinical trial enrollment criteria from a user, including but not limited to genetic targeting criteria; searching a knowledge base of patient test information received from a plurality of independent entities for patients that match the clinical trial enrollment criteria; and providing to the user search results for consented patients that match the clinical trial enrollment criteria.Type: GrantFiled: June 30, 2014Date of Patent: May 26, 2020Assignees: QIAGEN Redwood City, Inc., QIAGEN GmbHInventors: Douglas E. Bassett, Jr., Daniel R. Richards, Peer M. Schatz
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Patent number: 10658073Abstract: Disclosed herein are system, method, and computer program product embodiments for building a community database of allele counts. An embodiment operates by receiving human variant datasets derived from samples generated by distinct users, wherein the users consented to share pooled variant observations with other users; determining that a plurality of variant observations meet the inclusion criteria for a pool; and calculating one or more anonymized allele statistics from the pool.Type: GrantFiled: August 15, 2014Date of Patent: May 19, 2020Assignees: QIAGEN Redwood City, Inc., QIAGEN GmbHInventors: Douglas E. Bassett, Jr., Daniel R. Richards, Peer M. Schatz
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Patent number: 10453553Abstract: Methods for identifying disease-related pathways that can used to identify drug discovery targets, to identify new uses for known drugs, to identify markers for drug response, and related purposes.Type: GrantFiled: June 10, 2013Date of Patent: October 22, 2019Assignee: QIAGEN Redwood City, Inc.Inventors: Richard O. Chen, Raymond J. Cho, Ramon M. Felciano, Bret Holley, Viresh Patel, Daniel R. Richards, Sushma Selvarajan, Keith Steward, Sara Schneider
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Publication number: 20190164630Abstract: Methods for identifying disease-related pathways that can be used to identify drug discovery targets, to identify new uses for known drugs, to identify markers for drug response, and related purposes.Type: ApplicationFiled: June 25, 2018Publication date: May 30, 2019Inventors: Richard O. Chen, Raymond J. Cho, Ramon M. Felciano, Bret Holley, Viresh Patel, Daniel R. Richards, Sushma Selvarajan, Keith Steward, Sara Tanenbaum Schneider
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Patent number: 10006148Abstract: Methods for identifying disease-related pathways that can be used to identify drug discovery targets, to identify new uses for known drugs, to identify markers for drug response, and related purposes.Type: GrantFiled: July 28, 2014Date of Patent: June 26, 2018Assignee: QIAGEN Redwood City, Inc.Inventors: Richard O. Chen, Raymond J. Cho, Ramon M. Felciano, Bret Holley, Viresh Patel, Daniel R. Richards, Sushma Selvarajan, Keith Steward, Sara Tanenbaum Schneider
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Patent number: 9514408Abstract: Methods for constructing and maintaining knowledge representation systems are disclosed herein. The knowledge representation system is initially organized and populated using knowledge engineers. After the initial organization, scientific domain experts digest and structure source texts for direct entry into the knowledge representation system using templates created by the knowledge engineers. These templates constrain both the form and content of the digested information, allowing it to be entered directly into the knowledge representation system. Although knowledge engineers are available to evaluate and dispose of those instances when the digested information cannot be entered in the form required by the templates, their role is much reduced from conventional knowledge representation system construction methods. The methods disclosed herein permit the construction and maintenance of a much larger knowledge representation system than could be constructed and maintained using known methods.Type: GrantFiled: January 18, 2013Date of Patent: December 6, 2016Assignee: INGENUITY SYSTEMS, INC.Inventors: Raymond J. Cho, Richard O. Chen, Ramon M. Felciano, Daniel R. Richards
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Publication number: 20160048564Abstract: Disclosed herein are system, method, and computer program product embodiments for building a community database of allele counts. An embodiment operates by receiving human variant datasets derived from samples generated by distinct users, wherein the users consented to share pooled variant observations with other users; determining that a plurality of variant observations meet the inclusion criteria for a pool; and calculating one or more anonymized allele statistics from the pool.Type: ApplicationFiled: August 15, 2014Publication date: February 18, 2016Applicants: QIAGEN Redwood City, Inc., QIAGEN GmbHInventors: Douglas E. Bassett, JR., Daniel R. Richards, Peer M. Schatz
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Publication number: 20150379193Abstract: Disclosed herein are system, method, and computer program product embodiments for aiding in the interpretation of variants observed in clinical sequencing data. An embodiment operates by receiving clinical trial enrollment criteria from a user, including but not limited to genetic targeting criteria; searching a knowledge base of patient test information received from a plurality of independent entities for patients that match the clinical trial enrollment criteria; and providing to the user search results for consented patients that match the clinical trial enrollment criteria.Type: ApplicationFiled: June 30, 2014Publication date: December 31, 2015Applicants: QIAGEN Redwood City, Inc., QIAGEN GmbHInventors: Douglas E. BASSETT, JR., Daniel R. Richards, Peer M. Schatz
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Publication number: 20150024951Abstract: Methods for identifying disease-related pathways that can be used to identify drug discovery targets, to identify new uses for known drugs, to identify markers for drug response, and related purposes.Type: ApplicationFiled: July 28, 2014Publication date: January 22, 2015Inventors: Richard O. CHEN, Raymond J. CHO, Ramon M. FELCIANO, Bret HOLLEY, Viresh PATEL, Daniel R. RICHARDS, Sushma SELVARAJAN, Keith STEWARD, Sara Tanenbaum SCHNEIDER
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Publication number: 20140359422Abstract: Methods and systems for filtering variants in data sets comprising genomic information are provided herein.Type: ApplicationFiled: November 6, 2012Publication date: December 4, 2014Inventors: Douglas E. Bassett, JR., Daniel R. Richards
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Patent number: 8793073Abstract: Methods for identifying disease-related pathways that can be used to identify drug discovery targets, to identify new uses for known drugs, to identify markers for drug response, and related purposes.Type: GrantFiled: August 1, 2003Date of Patent: July 29, 2014Assignee: Ingenuity Systems, Inc.Inventors: Richard O. Chen, Raymond J. Cho, Ramon M. Felciano, Brett Holley, Viresh Patel, Daniel R. Richards, Sushma Selvarajan, Keith Steward, Sara Tanenbaum Schneider
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Publication number: 20140121120Abstract: Methods for identifying disease-related pathways that can used to identify drug discovery targets, to identify new uses for known drugs, to identify markers for drug response, and related purposes.Type: ApplicationFiled: June 10, 2013Publication date: May 1, 2014Applicant: Ingenuity Systems, Inc.Inventors: Richard O. Chen, Raymond J. Cho, Ramon M. Felciano, Bret Holley, Viresh Patel, Daniel R. Richards, Sushma Selvarajan, Keith Steward, Sara Schneider
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Publication number: 20140019404Abstract: Methods for constructing and maintaining knowledge representation systems are disclosed herein. The knowledge representation system is initially organized and populated using knowledge engineers. After the initial organization, scientific domain experts digest and structure source texts for direct entry into the knowledge representation system using templates created by the knowledge engineers. These templates constrain both the form and content of the digested information, allowing it to be entered directly into the knowledge representation system. Although knowledge engineers are available to evaluate and dispose of those instances when the digested information cannot be entered in the form required by the templates, their role is much reduced from conventional knowledge representation system construction methods. The methods disclosed herein permit the construction and maintenance of a much larger knowledge representation system than could be constructed and maintained using known methods.Type: ApplicationFiled: January 18, 2013Publication date: January 16, 2014Applicant: INGENUITY Systems, Inc.Inventors: Raymond J. Cho, Richard O. Chen, Ramon M. Felciano, Daniel R. Richards
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Patent number: 8489334Abstract: Method for identifying disease-related pathways that can used to identify discovery targets, to identify new uses for known drugs, to identify markers for drug response, and related purposes.Type: GrantFiled: February 3, 2003Date of Patent: July 16, 2013Assignee: Ingenuity Systems, Inc.Inventors: Richard O. Chen, Raymond J. Cho, Ramon M. Felciano, Bret Holley, Viresh Patel, Daniel R. Richards, Sushma Selvarajan, Keith Steward, Sara Schneider
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Patent number: 8392353Abstract: Methods for constructing and maintaining knowledge representation systems (KRS) are disclosed. The KRS is initially organized and populated using knowledge engineers. After initial organization, scientific domain experts digest and structure source texts for direct entry into the KRS using templates. These templates constrain both the form and content of the digested information, allowing it to be entered directly into the KRS. The methods disclosed herein permit the construction and maintenance of a much larger KRS than could be constructed and maintained using known methods. Fact type specific fact templates are completed, accepting predefined fact types found in predetermined information sources. Fact template may comprise a user interface that constrains user entry to one of a predetermined set of valid entries. The user interface may include a user field that permits entry of new information not included in the predetermined set of valid user entries.Type: GrantFiled: July 8, 2009Date of Patent: March 5, 2013Assignee: Ingenuity Systems Inc.Inventors: Raymond J. Cho, Richard O. Chen, Ramon M. Felciano, Daniel R. Richards
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Publication number: 20110191286Abstract: The present invention relates to the field of information extraction and storage id more specifically to techniques for extracting information from a plurality of articles in a distributed manner and for storing the extracted information in an information store an embodiment of the present invention identifies a plurality of articles from which information to be extracted and a plurality of information extractors for extracting the information from e articles. A database is provided for storing information related to the plurality of articles and the plurality of information extractors. The plurality of articles are assigned to the plurality of information extractors for information extraction. Information extracted by formation extractors from the articles is stored in the information store.Type: ApplicationFiled: February 16, 2011Publication date: August 4, 2011Inventors: Raymond J. Cho, Richard O. Chen, Ramon M. Felciano, Daniel R. Richards, Philippa Norman
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Patent number: 7650339Abstract: A method, system, and computer program product are provided for extracting information from a plurality of articles in a distributed manner and for storing the extracted information in an information store. The invention identifies a plurality of articles from which information is to be extracted and a plurality of information extractors for extracting the information from the articles. Each article is assigned a priority score and ranking the articles from highest to lowest priority, thereby generating a queue; wherein the priority score for each article is calculated using a user-configurable priority calculation algorithm. The plurality of articles is assigned to the plurality of information extractors based on order in the queue, wherein an article with a higher rank is presented for information extraction before an article with a lower rank. Information extracted by information extractors from the articles is stored in the information store.Type: GrantFiled: June 8, 2004Date of Patent: January 19, 2010Assignee: Ingenuity Systems, Inc.Inventors: Raymond J. Cho, Richard O. Chen, Ramon M. Felciano, Daniel R. Richards, Philippa Norman
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Publication number: 20100010957Abstract: Methods for constructing and maintaining knowledge representation systems are disclosed herein. The knowledge representation system is initially organized and populated using knowledge engineers. After the initial organization, scientific domain experts digest and structure source texts for direct entry into the knowledge representation system using templates created by the knowledge engineers. These templates constrain both the form and content of the digested information, allowing it to be entered directly into the knowledge representation system. Although knowledge engineers are available to evaluate and dispose of those instances when the digested information cannot be entered in the form required by the templates, their role is much reduced from conventional knowledge representation system construction methods. The methods disclosed herein permit the construction and maintenance of a much larger knowledge representation system than could be constructed and maintained using known methods.Type: ApplicationFiled: July 8, 2009Publication date: January 14, 2010Applicant: INGENUITY Systems, Inc., a Delaware CorporationInventors: Raymond J. Cho, Richard O. Chen, Ramon M. Felciano, Daniel R. Richards