Patents by Inventor Daniel Summerer

Daniel Summerer has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230043577
    Abstract: An isolated Methyl-CpG binding domain (MBD) variant may include an MBD core domain having at least 60% sequence homology relative to any one of SEQ ID Nos. 1-45 and comprising at least one amino acid substitution relative to the corresponding wildtype MBD in various positions. The isolated MBD variant or the conjugate may be used for determining the methylation state of cytosine residues and/or oxidation state of 5-methylated cytosine residues in a CpG dinucleotide of interest and its complement in a DNA molecule or for the enrichment of DNA molecules comprising a CpG dinucleotide of interest and its complement. At least one cytosine nucleobase in the CpG dinucleotide may be modified to be 5-methylcytosine (mC), 5-hydroxymethylcytosine (hmC), 5-formylcytosine (fC), or 5-carboxylcytosine (caC).
    Type: Application
    Filed: December 29, 2020
    Publication date: February 9, 2023
    Inventors: Daniel SUMMERER, Benjamin BUCHMULLER
  • Patent number: 9879315
    Abstract: Methods for the differentiation of a 5-hydroxymethyl modification of a cytosine residue of interest in a nucleic acid molecule from (i) a 5-methyl modification of the cytosine residue of interest or (ii) an unmodified cytosine residue of interest, the methods making use of the capability of transcription-activator-like effector (TALE) proteins to preferentially bind with strong affinity to nucleic acid sequences containing non-modified cytosine residues or 5-methyl modified cytosine residues, and to bind, if at all, with only strongly reduced affinity to nucleic acid sequences containing 5-hydroxymethyl modified cytosine residues. The present invention further relates to respective uses of TALE proteins for the differentiation of a 5-hydroxymethyl modification of a cytosine residue of interest in a nucleic acid molecule from (i) a 5-methyl modification of the cytosine residue of interest or (ii) the unmodified cytosine residue of interest.
    Type: Grant
    Filed: June 26, 2014
    Date of Patent: January 30, 2018
    Assignee: Universität Konstanz
    Inventors: Daniel Summerer, M. Grzegorz Kubik, Moritz Johannes Schmidt
  • Publication number: 20160138094
    Abstract: The present invention relates to methods for the differentiation of a 5-hydroxymethyl modification of a cytosine residue of interest in a nucleic acid molecule from (i) a 5-methyl modification of said cytosine residue of interest o,r (ii) said unmodified cytosine residue of interest, said methods making use of the capability of transcription-activator-like effector (TALE) proteins to preferentially bind with strong affinity to nucleic acid sequences containing non-modified cytosine residues or 5-methyl modified cytosine residues, and to bind, if at all, with only strongly reduced affinity to nucleic acid sequences containing 5-hydroxymethyl modified cytosine residues. The present invention further relates to respective uses of TALE proteins for the differentiation of a 5-hydroxymethyl modification of a cytosine residue of interest in a nucleic acid molecule from (i) a 5-methyl modification of said cytosine residue of interest or (ii) said unmodified cytosine residue of interest.
    Type: Application
    Filed: June 26, 2014
    Publication date: May 19, 2016
    Inventors: Daniel Summerer, M. Grzegorz Kubik, Moritz Johnannes Schmidt
  • Patent number: 9102932
    Abstract: The invention relates to orthogonal pairs of tRNAs and aminoacyl-tRNA synthetase that can incorporate unnatural amino acid into proteins produced in eubacterial host cells such as E. coli, or in a eukaryotic host such as a yeast cell. The invention provides, for example but not limited to, novel orthogonal synthetases, methods for identifying and making the novel synthetases, methods for producing proteins containing unnatural amino acids, and translation systems.
    Type: Grant
    Filed: June 8, 2012
    Date of Patent: August 11, 2015
    Assignee: The Scripps Research Institute
    Inventors: Peter G. Schultz, Lital Alfonta, Johnathan R. Chittuluru, Alexander Deiters, Dan Groff, Daniel Summerer, Meng-Lin Tsao, Jiangyun Wang, Ning Wu, Jianming Xie, Huaqiang Zeng, Mohammad Seyedsayamdost, James Turner
  • Patent number: 8759061
    Abstract: The present invention relates to DNA polymerases with a special mutation which have an enhanced mismatch discrimination, the preparation and use thereof. The thermostable DNA polymerases with this mutation are particularly suitable for diagnostic and molecular-biological methods, e.g., allele-specific PCR.
    Type: Grant
    Filed: February 4, 2005
    Date of Patent: June 24, 2014
    Assignee: Rheinische Friedrich-Wilhelms-Universitaet Bonn
    Inventors: Andreas Marx, Daniel Summerer, Nicolas Zackes Rudinger
  • Publication number: 20130244245
    Abstract: The invention relates to orthogonal pairs of tRNAs and aminoacyl-tRNA synthetase that can incorporate unnatural amino acid into proteins produced in eubacterial host cells such as E. coli, or in a eukaryotic host such as a yeast cell. The invention provides, for example but not limited to, novel orthogonal synthetases, methods for identifying and making the novel synthetases, methods for producing proteins containing unnatural amino acids, and translation systems.
    Type: Application
    Filed: June 8, 2012
    Publication date: September 19, 2013
    Applicant: The Scripps Research Institute
    Inventors: Peter G. Schultz, Lital Alfonta, Johnathan R. Chittuluru, Alexander Deiters, Dan Groff, Daniel Summerer, Meng-Lin Tsao, Jiangyun Wang, Ning Wu, Jianming Xie, Huaqiang Zeng, Mohammad Seyedsayamdost, James Turner
  • Publication number: 20120045771
    Abstract: The invention relates to a method for isolation of target molecules from a nucleic acid population.
    Type: Application
    Filed: December 11, 2009
    Publication date: February 23, 2012
    Applicant: FEBIT HOLDING GMBH
    Inventors: Markus Beier, Peer F. Staehler, Cord F. Staehler, Daniel Summerer, Jack T. Leonard, Stephan Bau, Anthony Caruso, Nadine Schracke, Andreas Keller, Helmut Hanenberg, Olaf Eckermann
  • Publication number: 20110092380
    Abstract: The invention relates to improved molecular-biological processing equipment and an improved method of processing biological samples. The invention combines the provision of biologically functional molecules such as nucleic acids and peptides and of derivatives or analogs of these two classes of molecules in miniaturized flow cells with the sequential addition of reagents or fluids and serves for the processing of biological samples, such as proteins, nucleic acids, biogenic small molecules such as e.g. metabolites, viruses or cells, which for this purpose are introduced into the miniaturized flow cells.
    Type: Application
    Filed: December 31, 2007
    Publication date: April 21, 2011
    Applicant: FEBIT HOLDING GMBH
    Inventors: Peer Stahler, Markus Beier, Cord Stahler, Daniel Summerer, Mark Matzas, Sonja Vorwerk
  • Publication number: 20100256012
    Abstract: The invention relates to an extraction method for isolating target molecules from a sample with the help of a molecule library.
    Type: Application
    Filed: November 24, 2008
    Publication date: October 7, 2010
    Applicant: FEBIT HOLDING GMBH
    Inventors: Markus Beier, Stephan Bau, Daniel Summerer, Mark Matzas, Peer F. Staehler
  • Publication number: 20080233611
    Abstract: The invention relates to orthogonal pairs of tRNAs and aminoacyl-tRNA synthetases that can incorporate unnatural amino acids into proteins produced in eubacterial host cells such as E. coli, or in a eukaryotic host such as a yeast cell. The invention provides, for example but not limited to, novel orthogonal synthetases, methods for identifying and making the novel synthetases, methods for producing proteins containing unnatural amino acids, and translation systems.
    Type: Application
    Filed: October 27, 2005
    Publication date: September 25, 2008
    Applicant: THE SCRIPPS RESEARCH INSTITUTE
    Inventors: Peter G. Schultz, Lital Alfonta, Jonathan R. Chittuluru, Alexander Deiters, Dan Groff, Daniel Summerer, Meng-Lin Tsao, Jiangyun Wang, Ning Wu, Jianming Xie, Huaqiang Zeng