Abstract: Apparatus and methods for amplification of DNA are provided that use sonic energy in place of conventional thermocyclers. In one embodiment, sonic energy is applied to a PCR cocktail to effect dissociation of double stranded DNA into single strands of DNA. A quiescence stage, where no sonic energy is applied, results in amplification of DNA. Repetition of the cycles of application of sonic energy and cessation of application of sonic energy results in DNA amplification.

Abstract: Apparatus for optimizing DNA amplification are provided. A DNA cycler in accordance with the invention preferably includes a detector capable of measuring a parameter of at least one stage of DNA amplification that changes as the reaction of said stage approaches completion. It is presently preferred that fluorescence be used as such parameter. A microprocessor may be used to make comparisons of the value of the parameter over time, particularly as the reaction nears completion. A controller is used to terminate the current stage and progress to the next stage of DNA amplification when the reaction of the current stage has reached a desired state of completion.

Abstract: Apparatus and methods for optimizing DNA amplification are provided. The apparatus of the invention includes a DNA amplification cycler and a detector capable of measuring a parameter of at least one stage of DNA amplification that changes as the reaction of said stage approaches completion. It is presently preferred that fluorescence be used as such parameter. A microprocessor may be used to make comparisons of the value of the parameter over time, particularly as the reaction nears completion. A controller is used to terminate the current stage and progress to the next stage of DNA amplification when the reaction of the current stage has reached a desired state of completion.

Abstract: Apparatus and methods for exciting and detecting fluorescence in samples are disclosed. In one embodiment, a sample holder for holding a plurality of samples is provided together with an optical manifold having an excitation source, a photo receiver, or both, for each of the plurality of samples. In another embodiment, the optical manifold contains only the excitation source or a photo receiver, and the other is associated with the sample holder. This system permits for rapid excitation and measurement of fluorescence without the use of moving parts and without any opto-mechanical or electronic disturbance. It exhibits an exceptional signal to noise ratio, which permits it to differentiate between very low level differences in fluorescence.