Patents by Inventor Dapeng Sun

Dapeng Sun has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240124854
    Abstract: The invention includes a mutant Taq polymerase, which can significantly extend and amplify a target sequence where the extension conditions are time limited to as little as one second. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Application
    Filed: November 3, 2023
    Publication date: April 18, 2024
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Publication number: 20240052326
    Abstract: Disclosed are Taq DNA polymerase mutants which exhibit enhanced efficiency in qPCR compared to the wild type Taq DNA polymerase. Such mutants include: V62S, V64S, A70F, F73A, A77F, P253G, E255K, D257R, A259F, A271F, L288S, E289K, S357I, L361S, L376S, P382G, T385I, G418P, R419D, E421K, L461S, A472F, E497K, L498S, E524K, D551R, R556D, S679l, L789S, E189K/E507K/E742K (See Sequence Listing Guide for the mutants' amino acid and protein sequences).
    Type: Application
    Filed: April 3, 2023
    Publication date: February 15, 2024
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby
  • Patent number: 11821010
    Abstract: The invention includes a mutant Taq polymerase, which can significantly extend and amplify a target sequence where the extension conditions are time limited to as little as one second. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Grant
    Filed: November 30, 2020
    Date of Patent: November 21, 2023
    Assignee: AbClonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Publication number: 20230332117
    Abstract: The invention includes a mutant Taq polymerase, which can effectively amplify a target sequence under conditions of salt concentration(s) similar to body fluids, including blood, serum or plasma preserved with sodium citrate. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Application
    Filed: September 28, 2021
    Publication date: October 19, 2023
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Patent number: 11788082
    Abstract: A number of T4 DNA ligase mutants exhibiting enhanced ligation activity at temperatures above 37° C. compared to the wild-type ligase were engineered, characterized, and selected via gel electrophoresis of ligation products from a standard ligation assay. T4 Ligase catalyzes the formation of phosphodiester bonds between the 5? and 3? ends of complementary cohesive ends or blunt ends of duplex DNA, a process that is vital to numerous molecular biology processes including cloning and sequencing.
    Type: Grant
    Filed: February 22, 2022
    Date of Patent: October 17, 2023
    Assignee: ABclonal Science, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Dapeng Sun, Alicia DiCicco
  • Patent number: 11781126
    Abstract: Proteases are enzymes which hydrolyze protein enzymes, eliminating their activity. The present invention exploits the hydrolyzing activity of proteases including proteinase K, endoproteinase LysC and/or trypsin to control the activity of restriction enzymes and/or eliminate or reduce production of unwanted DNA or RNA fragments (known as star activity).
    Type: Grant
    Filed: November 12, 2022
    Date of Patent: October 10, 2023
    Assignee: ABclonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby, Michaela Shottes
  • Patent number: 11767524
    Abstract: Disclosed is a product and process, wherein one adds a N-terminal Histamine-Maltose Binding Protein (“MBP”) tag to endonucleases, including restriction endonucleases like Hind III, and binds the tagged fusion protein to a solid support, preferably beads, once the enzyme has digested oligonucleotides in solution, in order to arrest further digestion. Preferred beads for binding the tagged enzyme are magnetic beads, which can easily be removed from solution by binding to a support and then removing it, or can be accumulated by magnetic attraction in a particular region. More preferred are magnetic beads bound to iminodiacetic acid or nitrilotriacetic acid.
    Type: Grant
    Filed: September 22, 2020
    Date of Patent: September 26, 2023
    Assignee: ABclonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun, Michaela Shottes
  • Publication number: 20230295707
    Abstract: The invention includes a mutant T4 DNA ligase or a biologically active fragment thereof, which has greater activity than wild type T4 DNA ligase. The mutant T4 DNA ligase, or the biologically active fragment, has one or more substitutions differing from the wild type, as described more fully in the Summary.
    Type: Application
    Filed: March 21, 2022
    Publication date: September 21, 2023
    Inventors: Zhenyu Zhu, Aine Quimby, Dapeng Sun, Alicia DiCicco
  • Publication number: 20230265412
    Abstract: A number of T4 DNA ligase mutants exhibiting enhanced ligation activity at temperatures above 37° C. compared to the wild-type ligase were engineered, characterized, and selected via gel electrophoresis of ligation products from a standard ligation assay. T4 Ligase catalyzes the formation of phosphodiester bonds between the 5? and 3? ends of complementary cohesive ends or blunt ends of duplex DNA, a process that is vital to numerous molecular biology processes including cloning and sequencing.
    Type: Application
    Filed: February 22, 2022
    Publication date: August 24, 2023
    Inventors: Zhenyu Zhu, Aine Quimby, Dapeng Sun, Alicia DiCicco
  • Publication number: 20230212550
    Abstract: The invention includes a mutant T4 DNA ligase or a biologically active fragment thereof, which has greater activity than wild type T4 DNA ligase. The mutant T4 DNA ligase, or the biologically active fragment, has one or more substitutions differing from the wild type, as described more fully in the Summary with reference to the Sequence Listing.
    Type: Application
    Filed: December 2, 2022
    Publication date: July 6, 2023
    Inventors: Zhenyu Zhu, Aine Quimby, Dapeng Sun, Alicia DiCicco
  • Patent number: 11649441
    Abstract: Disclosed are Taq DNA polymerase mutants which exhibit enhanced efficiency in qPCR compared to the wild type Taq DNA polymerase. Such mutants include: V62S, V64S, A70F, F73A, A77F, P253G, E255K, D257R, A259F, A271F, L288S, E289K, S357I, L361S, L376S, P382G, T385I, G418P, R419D, E421K, L461S, A472F, E497K, L498S, E524K, D551R, R556D, S679I, L789S, E189K/E507K/E742K (See Sequence Listing Guide for the mutants' amino acid and protein sequences).
    Type: Grant
    Filed: September 9, 2021
    Date of Patent: May 16, 2023
    Assignee: ABCLONAL SCIENCE, INC.
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby
  • Publication number: 20230111383
    Abstract: Proteases are enzymes which hydrolyze protein enzymes, eliminating their activity. The present invention exploits the hydrolyzing activity of proteases including proteinase K, endoproteinase LysC and/or trypsin to control the activity of restriction enzymes and/or eliminate or reduce production of unwanted DNA or RNA fragments (known as star activity).
    Type: Application
    Filed: November 12, 2022
    Publication date: April 13, 2023
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby, Michaela Shoties
  • Publication number: 20230094503
    Abstract: The invention includes a mutant Taq polymerase, which can effectively amplify a target sequence under conditions of salt concentration(s) similar to body fluids, including blood, serum or plasma preserved with sodium citrate. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Application
    Filed: September 28, 2021
    Publication date: March 30, 2023
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Patent number: 11613738
    Abstract: The invention includes a mutant Taq polymerase or biologically active fragment thereof, which can significantly extend and amplify a target sequence in comparison to wild type Taq polymerase, where the extension mixture includes asymmetrical cyanine dye, including SYBR Green I. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Grant
    Filed: May 11, 2020
    Date of Patent: March 28, 2023
    Assignee: ABCLONAL SCIENCE, INC.
    Inventors: Zhenyu Zhu, Dapeng Sun
  • Patent number: 11512296
    Abstract: Proteases are enzymes which hydrolyze protein enzymes, eliminating their activity. The present invention exploits the hydrolyzing activity of proteases including proteinase K, endoproteinase LysC and/or trypsin to control the activity of restriction enzymes and/or eliminate or reduce production of unwanted DNA or RNA fragments (known as star activity).
    Type: Grant
    Filed: February 9, 2021
    Date of Patent: November 29, 2022
    Assignee: ABclonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby, Michaela Shottes
  • Publication number: 20220106576
    Abstract: Disclosed are Taq DNA polymerase mutants which exhibit enhanced efficiency in qPCR compared to the wild type Taq DNA polymerase. Such mutants include: V62S, V64S, A70F, F73A, A77F, P253G, E255K, D257R, A259F, A271F, L288S, E289K, S357I, L361S, L376S, P382G, T385I, G418P, R419D, E421K, L461S, A472F, E497K, L498S, E524K, D551R, R556D, S679I, L789S, E189K/E507K/E742K (See Sequence Listing Guide for the mutants' amino acid and protein sequences).
    Type: Application
    Filed: September 9, 2021
    Publication date: April 7, 2022
    Inventors: Zhenyu Zhu, Dapeng Sun, Aine Quimby
  • Patent number: 11168312
    Abstract: The invention includes a mutant Taq polymerase, which can effectively amplify a target sequence under conditions of salt concentration(s) similar to body fluids, including blood, serum or plasma preserved with sodium citrate. The mutant Taq polymerase, or a biologically active fragment thereof, has one or more substitutions differing from the wild type as shown in Table I.
    Type: Grant
    Filed: March 9, 2020
    Date of Patent: November 9, 2021
    Assignee: ABclonal Science, Inc.
    Inventors: Zhenyu Zhu, Dapeng Sun, Weiling Peng
  • Publication number: 20210238566
    Abstract: Methods and compositions are provided for engineering mutant enzymes with reduced star activity where the mutant enzymes have a fidelity index (FI) in a specified buffer that is greater than the FI of the non-mutated enzyme in the same buffer.
    Type: Application
    Filed: April 9, 2021
    Publication date: August 5, 2021
    Applicant: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shengxi Guan, Dapeng Sun, Yishu Huang, Xuhui Lai, Siu-hong Chan, Xianghui Li, Shuang-Yong Xu, Chunhua Zhang
  • Publication number: 20210230581
    Abstract: Compositions and methods are provided for enzymes with altered properties that involve a systematic approach to mutagenesis and a screening assay that permits selection of the desired proteins. Embodiments of the method are particularly suited for modifying specific properties of restriction endonucleases such as star activity. The compositions includes restriction endonucleases with reduced star activity as defined by an overall fidelity index improvement factor.
    Type: Application
    Filed: April 12, 2021
    Publication date: July 29, 2021
    Applicant: New England Biolabs, Inc.
    Inventors: Zhenyu Zhu, Aine Quimby, Shuang-Yong Xu, Shengxi Guan, Hua Wei, Penghua Zhang, Dapeng Sun, Siu-hong Chan
  • Patent number: D995936
    Type: Grant
    Filed: June 5, 2023
    Date of Patent: August 15, 2023
    Assignee: Hangzhou Yijing Technology Co., Ltd.
    Inventors: Dapeng Sun, Xin Chao