Patents by Inventor David J. Beebe

David J. Beebe has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 12636644
    Abstract: A microfluidic platform is provided for controlling and configuring the evolution of a gradient. The microfluidic platform includes a plate having an outer surface and defining a chamber therein for receiving cells and/or drug/reagent particles of interest captured within a polymerized material. A plurality of wells are adapted for receiving a one or more types of desired media to form gradients in the polymerized material. The plurality of wells have first portions communicating with the outer surface of the plate and second portions communicating with the chamber. The first and second portions of the plurality of wells having corresponding widths and cross-sectional areas, and each of the plurality of wells is spaced from an adjacent well of the plurality of wells by a distance.
    Type: Grant
    Filed: May 24, 2022
    Date of Patent: May 26, 2026
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Jose Ayuso, Maria Virumbrales Munoz, Cristina Sanchez de Diego
  • Publication number: 20260078455
    Abstract: Stabilized interface systems and compositions for positioning target(s), comprising fluids, associated structural material(s) having a pore that permits passage and positioning of targets and related compositions, and a fluid phase, layer, or interface stabilized with the associated structural material. Miscible interface systems and compositions for positioning target(s) for detection comprising two or more fluid regions with different properties within a phase or layer where the fluid regions are stabilized with respect to each other using a solid or semi-solid structure or material with at least one pore that allows passage of said target(s) wherein stabilization allows mass transport of a fluid constituent via diffusion to prevail over bulk fluid motion.
    Type: Application
    Filed: October 13, 2025
    Publication date: March 19, 2026
    Inventors: David J. Beebe, Patrick McMinn, Brianna Mullins, Jay Warrick
  • Publication number: 20250290926
    Abstract: Disclosed herein are methods, systems, and kits for separating a cell in an aqueous sample, cell comprising a primary binding member, a magnetic particle comprising a particle binding site, a secondary binding member comprising a primary binding member binding site reactive to the primary binding member, and a binding site reactive to the particle binding site. The methods and systems expose the aqueous sample to the secondary binding member and to the magnetic particle to form a selected mixture including: a magnetically tagged cell of the secondary binding member bound to the particle binding site of the magnetic particle, and the secondary binding member bound to the primary binding member of the cell. Further, the selected mixture is placed on a surface of a substrate having an oil and is exposed to a magnetic field, magnetically attracting the magnetically tagged cell to the magnetic field, thereby separating the magnetically tagged cell from the aqueous sample to produce a separated aqueous sample.
    Type: Application
    Filed: March 15, 2024
    Publication date: September 18, 2025
    Inventors: David J. Beebe, Terry D. Juang, Sheena C. Kerr
  • Patent number: 12403477
    Abstract: A method and device of creating a lumen model in a microwell plate defining a well is provided. A rod is inserted through the well of the microwell plate and the well is filled with a polymerizable material. The material is polymerized in the well. The rod is removed from the well of the microwell plate such that the polymerized material defines a lumen.
    Type: Grant
    Filed: June 12, 2024
    Date of Patent: September 2, 2025
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Patrick H. McMinn
  • Patent number: 12359156
    Abstract: A platform and method for testing antibiotic sensitivity of a polymicrobial infection is provided. The platform includes a body defining a plurality of sets of chambers and a plurality of wells. Each set of chambers has a plurality of chambers adapted for culturing microbes of the polymicrobial infection therein. Each well is associated with a corresponding set of chambers and has an input in fluidic communication with the outlets of the plurality of chambers in the corresponding set of chambers. Selected antibiotic therapies may be received in the wells which fluidically connect the plurality of chambers in a corresponding set of chambers such that microbes cultured in the plurality of chambers in the corresponding set of chambers are in soluble factor contact.
    Type: Grant
    Filed: April 6, 2023
    Date of Patent: July 15, 2025
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Layla J. Barkal, Jason Yu
  • Publication number: 20250196134
    Abstract: A method and device are provided for detecting a target in a biological sample. The target binds to a solid phase substrate. First and second cavities in a plate are filled with an oil. The first and second cavities are in fluid communication with each other. The solid phase substrate is magnetically drawn sequentially from a drop of the biological sample in the first cavity, through the oil, into a drop of the reaction solution in the second cavity. A change in a parameter of the drop of the reaction solution indicates the presence of the target.
    Type: Application
    Filed: February 25, 2025
    Publication date: June 19, 2025
    Inventors: David J. Beebe, Duane S. Juang, Terry D. Juang, Thomas C. Friedrich, David H. O'Connor
  • Patent number: 12269031
    Abstract: A method and device are provided for detecting a target in a biological sample. The target binds to a solid phase substrate. First and second cavities in a plate are filled with an oil. The first and second cavities are in fluid communication with each other. The solid phase substrate is magnetically drawn sequentially from a drop of the biological sample in the first cavity, through the oil, into a drop of the reaction solution in the second cavity. A change in a parameter of the drop of the reaction solution indicates the presence of the target.
    Type: Grant
    Filed: June 5, 2020
    Date of Patent: April 8, 2025
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Duane S. Juang, Terry D. Juang, Thomas C. Friedrich, David H. O'Connor
  • Patent number: 12227739
    Abstract: A method and a device are provided for facilitating the disaggregation of a plurality of solid phase substrate as the plurality of solid phase substrate are transferred from a first location to a second location. A plurality of solid phase substrate are deposited at the first location and a plurality of particles are added to the plurality of solid phase substrate. A force is generated to draw the plurality of solid phase substrate from the first location to a second location. The plurality of particles causes clumps of the plurality of solid phase substrate to break apart as the plurality of solid phase substrate are moved in response to the force.
    Type: Grant
    Filed: February 7, 2020
    Date of Patent: February 18, 2025
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, David J Guckenberger, Jr., Hannah M Pezzi
  • Patent number: 12151244
    Abstract: A method and device of creating a lumen model in a microwell plate defining a well is provided. A rod is inserted through the well of the microwell plate and the well is filled with a polymerizable material. The material is polymerized in the well. The rod is removed from the well of the microwell plate such that the polymerized material defines a lumen.
    Type: Grant
    Filed: August 27, 2020
    Date of Patent: November 26, 2024
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Patrick H. McMinn
  • Publication number: 20240367174
    Abstract: A method and device of creating a lumen model in a microwell plate defining a well is provided. A rod is inserted through the well of the microwell plate and the well is filled with a polymerizable material. The material is polymerized in the well. The rod is removed from the well of the microwell plate such that the polymerized material defines a lumen.
    Type: Application
    Filed: June 12, 2024
    Publication date: November 7, 2024
    Inventors: David J. Beebe, Patrick H. McMinn
  • Publication number: 20230381775
    Abstract: A microfluidic platform is provided for controlling and configuring the evolution of a gradient. The microfluidic platform includes a plate having an outer surface and defining a chamber therein for receiving cells and/or drug/reagent particles of interest captured within a polymerized material. A plurality of wells are adapted for receiving a one or more types of desired media to form gradients in the polymerized material. The plurality of wells have first portions communicating with the outer surface of the plate and second portions communicating with the chamber. The first and second portions of the plurality of wells having corresponding widths and cross-sectional areas, and each of the plurality of wells is spaced from an adjacent well of the plurality of wells by a distance.
    Type: Application
    Filed: May 24, 2022
    Publication date: November 30, 2023
    Inventors: David J. Beebe, Jose Ayuso, Maria Virumbrales-Munoz, Cristina Sanchez de Diego
  • Patent number: 11724262
    Abstract: A device and method are provided to facilitate the handling of a volume of fluid. The device includes an elongated tube having an open first end and a second end. The tube defines a reservoir for receiving the volume of fluid. A stanchion has a first end received within the reservoir of the tube and a second end projecting from the open end of the elongated tube. In operation, the elongated tube is deposited in a first capsule having fluid therein. The first capsule is centrifuged such that the volume of fluid is received in a reservoir in the tube through the open end. The tube is removed from the first capsule and positioned in a second capsule such that the open end of the tube is spaced from a closed end of the second capsule. The second capsule is centrifuged such that the volume of fluid is expelled from the reservoir of the tube.
    Type: Grant
    Filed: September 25, 2020
    Date of Patent: August 15, 2023
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Jay W. Warrick, David J. Guckenberger, Jr.
  • Patent number: 11725172
    Abstract: A platform and method for testing antibiotic sensitivity of a polymicrobial infection is provided. The platform includes a body defining a plurality of sets of chambers and a plurality of wells. Each set of chambers has a plurality of chambers adapted for culturing microbes of the polymicrobial infection therein. Each well is associated with a corresponding set of chambers and has an input in fluidic communication with the outlets of the plurality of chambers in the corresponding set of chambers. Selected antibiotic therapies may be received in the wells which fluidically connect the plurality of chambers in a corresponding set of chambers such that microbes cultured in the plurality of chambers in the corresponding set of chambers are in soluble factor contact.
    Type: Grant
    Filed: December 12, 2018
    Date of Patent: August 15, 2023
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Layla J. Barkal, Jason Yu
  • Patent number: 11717830
    Abstract: An open microfluidic system is provided. The open microfluidic system including the extreme wettability of exclusive liquid repellency (ELR), open microchannels with high lateral resolution and low profile, various valve arrangements, capable of a broad range flow rates, and capable of spatially and temporally trapping particles in open fluid.
    Type: Grant
    Filed: June 26, 2020
    Date of Patent: August 8, 2023
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: Chao Li, David J. Beebe, Duane S. Juang
  • Publication number: 20230242856
    Abstract: A platform and method for testing antibiotic sensitivity of a polymicrobial infection is provided. The platform includes a body defining a plurality of sets of chambers and a plurality of wells. Each set of chambers has a plurality of chambers adapted for culturing microbes of the polymicrobial infection therein. Each well is associated with a corresponding set of chambers and has an input in fluidic communication with the outlets of the plurality of chambers in the corresponding set of chambers. Selected antibiotic therapies may be received in the wells which fluidically connect the plurality of chambers in a corresponding set of chambers such that microbes cultured in the plurality of chambers in the corresponding set of chambers are in soluble factor contact.
    Type: Application
    Filed: April 6, 2023
    Publication date: August 3, 2023
    Applicant: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Layla J. Barkal, Jason Yu
  • Patent number: 11691145
    Abstract: A platform and method for conducting multi-variable combinational interactions are provided. An array of multiplexing chambers in formed in a body. The body also includes a common well communicating with each multiplexing chamber of the array of multiplexing chambers and a plurality of variable wells. Each of variable wells communicates with at least one multiplexing chamber of the array of multiplexing chambers. The common well is loaded with a first variable and different variables are loaded in each of the plurality of variable wells. The interaction of the first variable with at least one of the different variables in each multiplexing chamber of the array of multiplexing chambers is observed.
    Type: Grant
    Filed: October 7, 2021
    Date of Patent: July 4, 2023
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Duane S. Juang, Jiaquan Yu, Jo Handelsman
  • Patent number: 11618021
    Abstract: A method of sample preparation for streamlined multi-step assays is provided. The method includes the step of providing a microfluidic device including a reservoir defined by a surface configured to repel an aqueous solution. A dried reagent is provided on a portion of the surface and the reservoir is filled with an oil. A first droplet formed from the aqueous solution is positioned on the dried reagent so to pick-up and re-dissolve the dried reagent therein so as to expose the portion of the surface. In addition, a second droplet of an aqueous solution may be deposited on a hydrophilic spot patterned on the surface. A magnetic force may be configured to interact magnetically with the paramagnetic beads within the first droplet to move the droplet through the oil in the reservoir or to move the paramagnetic beads from the first droplet, through the oil, into the second droplet.
    Type: Grant
    Filed: June 26, 2020
    Date of Patent: April 4, 2023
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Joshua M. Lang, Duane S. Juang, Scott M. Berry, Tamara S. Rodems
  • Patent number: 11430279
    Abstract: A microfluidic platform and method are provided. The microfluidic platform includes a base having an outer surface and a plurality of wells formed in the outer surface thereof for receiving fluid therein. The plurality of wells are in fluid communication with each other. A lid includes a plurality of channels having corresponding inputs and outputs. The lid is moveable between a first position wherein the lid is disengaged from the base and a second position wherein the inputs of each channel communicate with corresponding wells in the base. The fluid in each well is drawn into corresponding channels through the inputs thereof by capillary action.
    Type: Grant
    Filed: May 9, 2012
    Date of Patent: August 30, 2022
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: David J. Beebe, Erwin Berthler, Peter Cavnar, David John Guckenberger
  • Publication number: 20220097058
    Abstract: A platform and method for conducting multi-variable combinational interactions are provided. An array of multiplexing chambers in formed in a body. The body also includes a common well communicating with each multiplexing chamber of the array of multiplexing chambers and a plurality of variable wells. Each of variable wells communicates with at least one multiplexing chamber of the array of multiplexing chambers. The common well is loaded with a first variable and different variables are loaded in each of the plurality of variable wells. The interaction of the first variable with at least one of the different variables in each multiplexing chamber of the array of multiplexing chambers is observed.
    Type: Application
    Filed: October 7, 2021
    Publication date: March 31, 2022
    Inventors: David J. Beebe, Duane S. Juang, Jiaquan Yu, Jo Handelsman
  • Publication number: 20220062895
    Abstract: A microfluidic device and method of assaying for immune cell exhaustion therewith are provided. The microfluidic device includes a moveable rod positioned across a chamber of a microfluidic device adjacent a first end thereof. Target cells are mixed into a hydrogel and the hydrogel is injected into the chamber about the moveable rod. The hydrogel is polymerized in. the chamber and the moveable rod is removed from the hydrogel so as to form a passageway in the hydrogel. The passageway is filled with a solution including immune cells. The immune cells migrate/diffuse into the hydrogel. A gradient of nutrients is formed in the chamber from. the first end to a second end of the chamber. One or more biopsies of the hydrogel may be taken at user selected location(s) of the chamber.
    Type: Application
    Filed: August 27, 2020
    Publication date: March 3, 2022
    Inventors: David J. Beebe, Patrick H. McMinn, Jose M. Ayuso, Maria Virumbra!es-Munoz