Patents by Inventor David Jackson Stoddart
David Jackson Stoddart has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Patent number: 12173364Abstract: The invention relates to a method for sequencing a heteropolymeric target nucleic acid sequence that involves stochastic sensing. The invention also relates to a method for improving a pore for sequencing a target nucleic acid sequence by modifying one or more sites in the pore.Type: GrantFiled: April 27, 2020Date of Patent: December 24, 2024Assignee: Oxford University Innovation LimitedInventors: David Jackson Stoddart, Andrew John Heron, Giovanni Maglia, John Hagan Pryce Bayley
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Patent number: 11920193Abstract: Methods of characterizing an analyte using a detector such as a nanopore and an enzyme are provided. One aspect features methods for characterizing a double-stranded polynucleotide using a detector, e.g., without using a hairpin connecting a template and a complement of the double-stranded polynucleotide. Another aspect features methods for characterizing an analyte using a tag-modified nanopore with increased sensitivity and/or higher throughput. Compositions and systems including, e.g., adaptors for attachment to double-stranded polynucleotides and tag-modified nanopores, which can be used in the methods are also provided.Type: GrantFiled: June 6, 2019Date of Patent: March 5, 2024Assignee: Oxford Nanopore Technologies PLCInventors: James Anthony Clarke, James White, Richard Muscat, Jessica Mary May Johnson, Ramiz Iqbal Nathani, Andrew John Heron, Mark John Bruce, Lakmal Nishantha Jayasinghe, Domenico Caprotti, David Jackson Stoddart, Rebecca Victoria Bowen, Christopher James Wright, Paul Richard Moody
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Publication number: 20230374567Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterisation using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterised.Type: ApplicationFiled: March 31, 2023Publication date: November 23, 2023Applicant: OXFORD NANOPORE TECHNOLOGIES PLCInventors: David Jackson Stoddart, James White
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Patent number: 11649480Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterisation using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterised.Type: GrantFiled: May 25, 2017Date of Patent: May 16, 2023Assignee: Oxford Nanopore Technologies PLCInventors: David Jackson Stoddart, James White
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Publication number: 20230084931Abstract: Methods of characterizing an analyte using a nanopore. One aspect features methods for characterizing a double-stranded polynucleotide using a nanopore, e.g., without using a hairpin connecting a template and a complement of the double-stranded polynucleotide. Another aspect features methods for characterizing an analyte using a tag-modified nanopore with increased sensitivity and/or higher throughput. Compositions and systems including, e.g., adaptors for attachment to double-stranded polynucleotides and tag-modified nanopores, which can be used in the methods are also provided.Type: ApplicationFiled: August 3, 2022Publication date: March 16, 2023Applicant: Oxford Nanopore Technologies PLCInventors: James Anthony Clarke, James White, Richard Muscat, Jessica Mary May Knott, Ramiz Iqbal Nathani, Andrew John Heron, Mark John Bruce, Lakmal Jayasinghe, Domenico Caprotti, David Jackson Stoddart, Rebecca Victoria Bowen, Christopher James Wright, Paul Richard Moody
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Patent number: 11466317Abstract: Methods of characterizing an analyte using a nanopore. One aspect features methods for characterizing a double-stranded polynucleotide using a nanopore, e.g., without using a hairpin connecting a template and a complement of the double-stranded polynucleotide. Another aspect features methods for characterizing an analyte using a tag-modified nanopore with increased sensitivity and/or higher throughput. Compositions and systems including, e.g., adaptors for attachment to double-stranded polynucleotides and tag-modified nanopores, which can be used in the methods are also provided.Type: GrantFiled: November 29, 2017Date of Patent: October 11, 2022Assignee: Oxford Nanopore Technologies PLCInventors: James Clarke, James White, Richard Muscat, Jessica Mary May Knott, Ramiz Iqbal Nathani, Andrew John Heron, Mark John Bruce, Lakmal Nishantha Jayasinghe, Domenico Caprotti, David Jackson Stoddart, Rebecca Victoria Bowen, Christopher James Wright, Paul Richard Moody
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Publication number: 20220186274Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterisation using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterised.Type: ApplicationFiled: October 25, 2021Publication date: June 16, 2022Applicant: Oxford Nanopore Technologies PLCInventors: David Jackson Stoddart, James White
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Patent number: 11186857Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterisation using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterised.Type: GrantFiled: October 17, 2019Date of Patent: November 30, 2021Assignee: Oxford Nanopore Technologies PLCInventors: David Jackson Stoddart, James White
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Publication number: 20210363577Abstract: Methods of characterizing an analyte using a detector such as a nanopore and an enzyme are provided. One aspect features methods for characterizing a double-stranded polynucleotide using a detector, e.g., without using a hairpin connecting a template and a complement of the double-stranded polynucleotide. Another aspect features methods for characterizing an analyte using a tag-modified nanopore with increased sensitivity and/or higher throughput. Compositions and systems including, e.g., adaptors for attachment to double-stranded polynucleotides and tag-modified nanopores, which can be used in the methods are also provided.Type: ApplicationFiled: June 6, 2019Publication date: November 25, 2021Applicant: Oxford Nanopore Technologies LimitedInventors: James Anthony Clarke, James White, Richard Muscat, Jessica Mary May Johnson, Ramiz Iqbal Nathani, Andrew John Heron, Mark John Bruce, Lakmal Nishantha Jayasinghe, Domenico Caprotti, David Jackson Stoddart, Rebecca Victoria Bowen, Christopher James Wright, Paul Richard Moody
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Publication number: 20200407785Abstract: The invention relates to a method for sequencing a heteropolymeric target nucleic acid sequence that involves stochastic sensing. The invention also relates to a method for improving a pore for sequencing a target nucleic acid sequence by modifying one or more sites in the pore.Type: ApplicationFiled: April 27, 2020Publication date: December 31, 2020Applicant: Oxford University Innovation LimitedInventors: David Jackson Stoddart, Andrew John Heron, Giovanni Maglia, John Hagan Pryce Bayley
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Patent number: 10669581Abstract: The invention relates to a method for sequencing a heteropolymeric target nucleic acid sequence that involves stochastic sensing. The invention also relates to a method for improving a pore for sequencing a target nucleic acid sequence by modifying one or more sites in the pore.Type: GrantFiled: December 20, 2017Date of Patent: June 2, 2020Assignee: Oxford University Innovation LimitedInventors: David Jackson Stoddart, Andrew John Heron, Giovanni Maglia, John Hagan Pryce Bayley
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Publication number: 20200131549Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterization using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterized.Type: ApplicationFiled: October 17, 2019Publication date: April 30, 2020Applicant: Oxford Nanopore Technologies Ltd.Inventors: David Jackson Stoddart, James White
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Patent number: 10501767Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterization using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterized.Type: GrantFiled: August 14, 2014Date of Patent: December 10, 2019Assignee: Oxford Nanopore Technologies Ltd.Inventors: David Jackson Stoddart, James White
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Publication number: 20190352709Abstract: Methods of characterizing an analyte using a nanopore. One aspect features methods for characterizing a double-stranded polynucleotide using a nanopore, e.g., without using a hairpin connecting a template and a complement of the double-stranded polynucleotide. Another aspect features methods for characterizing an analyte using a tag-modified nanopore with increased sensitivity and/or higher throughput. Compositions and systems including, e.g., adaptors for attachment to double-stranded polynucleotides and tag-modified nanopores, which can be used in the methods are also provided.Type: ApplicationFiled: November 29, 2017Publication date: November 21, 2019Applicant: Oxford Nanopore Technologies LimitedInventors: James Clarke, James White, Richard Muscat, Jessica Mary May Knott, Ramiz Iqbal Nathani, Andrew John Heron, Mark John Bruce, Lakmal Nishantha Jayasinghe, Domenico Caprotti, David Jackson Stoddart, Rebecca Victoria Bowen, Christopher James Wright, Paul Richard Moody
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Publication number: 20190194722Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterisation using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterised.Type: ApplicationFiled: May 25, 2017Publication date: June 27, 2019Applicant: Oxford Nanopore Technologies Ltd.Inventors: David Jackson Stoddart, James White
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Publication number: 20180334707Abstract: The invention relates to a method for sequencing a heteropolymeric target nucleic acid sequence that involves stochastic sensing. The invention also relates to a method for improving a pore for sequencing a target nucleic acid sequence by modifying one or more sites in the pore.Type: ApplicationFiled: December 20, 2017Publication date: November 22, 2018Applicant: Oxford University Innovation LimitedInventors: David Jackson Stoddart, Andrew John Heron, Giovanni Maglia, John Hagan Pryce Bayley
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Publication number: 20170233803Abstract: The invention relates to a method for sequencing a heteropolymeric target nucleic acid sequence that involves stochastic sensing. The invention also relates to a method for improving a pore for sequencing a target nucleic acid sequence by modifying one or more sites in the pore.Type: ApplicationFiled: April 19, 2017Publication date: August 17, 2017Applicant: Oxford University Innovation LimitedInventors: David Jackson Stoddart, Andrew John Heron, Giovanni Maglia, John Hagan Pryce Bayley
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Patent number: 9551023Abstract: The invention relates to a method for modifying a template polynucleotide for characterization, especially for nanopore sequencing. The method produces a modified polynucleotide which is complementary to the template polynucleotide at some positions and which contains universal or abasic nucleotides at the other, and in some instances predicable, positions. The resulting modified polynucleotide can then be characterized.Type: GrantFiled: September 6, 2013Date of Patent: January 24, 2017Assignee: Oxford Nanopore Technologies Ltd.Inventors: Daniel John Turner, Clive Gavin Brown, Stuart William Reid, James Anthony Clarke, James White, David Jackson Stoddart
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Publication number: 20160194677Abstract: The invention relates to a method for modifying a template double stranded polynucleotide, especially for characterisation using nanopore sequencing. The method produces from the template a plurality of modified double stranded polynucleotides. These modified polynucleotides can then be characterised.Type: ApplicationFiled: August 14, 2014Publication date: July 7, 2016Applicant: Oxford Nanopore Technologies Ltd.Inventors: David Jackson Stoddart, James White
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Publication number: 20150247183Abstract: The invention relates to a method for modifying a template polynucleotide for characterisation, especially for nanopore sequencing. The method produces a modified polynucleotide which is complementary to the template polynucleotide at some positions and which contains universal or abasic nucleotides at the other, and in some instances predicable, positions. The resulting modified polynucleotide can then be characterised.Type: ApplicationFiled: September 6, 2013Publication date: September 3, 2015Inventors: Daniel John Turner, Clive Gavin Brown, Stuart William Reid, James Anthony Clarke, James White, David Jackson Stoddart