Patents by Inventor David Stenger

David Stenger has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240344124
    Abstract: One can enrich nucleic acid (RNA or DNA) from within a complex mixture in a sequence-specific manner by using a mutant of a Cas enzyme lacking nuclease activity, for example a mutant of Cas13a (dCas) from Leptotrichia wadeii. The nucleic acid is bound by the mutant protein as directed by guide RNA molecules (crRNA) and purified after association with an appropriate surface, such as quantum dots or functionalized beads. The nucleic acid is separated from the Cas and purified after precipitation or interaction with another surface. The resulting product can be directly processed via long-read sequencing.
    Type: Application
    Filed: November 15, 2023
    Publication date: October 17, 2024
    Inventors: Christopher M. Green, Joseph R. Spangler, Tomasz A. Leski, Kimihiro Susumu, Sebastian A. Diaz, Igor L. Medintz, David A. Stenger, Scott N. Dean
  • Patent number: 12108539
    Abstract: Described herein are ultra-thin nanocellulose flexible electronic device on which SU-8, an epoxy material which can become highly stressed upon UV exposure, is printed on desired areas. Upon UV exposure and then release from the surface it is anchored on, the nanocellulose device will spontaneously self-mold into a desired form due to stress differences between the SU-8 and the nanocellulose sheet. The flexible electronics can be manufactured using standard printed circuit board processing techniques, including electroless metallization and soldering of surface mount components.
    Type: Grant
    Filed: May 6, 2022
    Date of Patent: October 1, 2024
    Assignee: The Government of the United States of America, as represented by the Secretary of the Navy
    Inventors: Jonathan D. Yuen, Joyce C. Breger, David A. Stenger
  • Publication number: 20240254571
    Abstract: A technique for the design of minimum CRISPR RNA (crRNA) sets aids in the detection of diverse nucleic acid targets using sequence degeneracy. As a working example, candidate degenerate Cas13a crRNA sets were designed for detection of diverse RNA targets (Lassa virus). A decision tree machine learning (ML) algorithm (RuleFit) was applied to define the top attributes that determine the specificity of degenerate crRNAs to elicit collateral nuclease activity. This general ML approach can be applied to the design of degenerate crRNA sets for any CRISPR/Cas system.
    Type: Application
    Filed: January 25, 2024
    Publication date: August 1, 2024
    Inventors: Tomasz A. Leski, Joseph R. Spangler, Zheng Wang, Scott N. Dean, David A. Stenger
  • Publication number: 20240175076
    Abstract: A flexible strategy for assembling luminescent and colorimetric quantum dot/nucleic acid hairpin (QD-HP) molecular beacons for use in CRISPR/Cas diagnostics uses chimeric peptide/peptide nucleic acid (PNA) to conjugate fluorescently labeled DNA or RNA hairpins to ZnS-coated QDs.
    Type: Application
    Filed: July 5, 2023
    Publication date: May 30, 2024
    Inventors: Sebastián A. Díaz, Christopher M. Green, Joseph R. Spangler, Divita Mathur, Kimihiro Susumu, David A. Stenger, Igor L. Medintz
  • Publication number: 20220369470
    Abstract: Described herein are ultra-thin nanocellulose flexible electronic device on which SU-8, an epoxy material which can become highly stressed upon UV exposure, is printed on desired areas. Upon UV exposure and then release from the surface it is anchored on, the nanocellulose device will spontaneously self-mold into a desired form due to stress differences between the SU-8 and the nanocellulose sheet. The flexible electronics can be manufactured using standard printed circuit board processing techniques, including electroless metallization and soldering of surface mount components.
    Type: Application
    Filed: May 6, 2022
    Publication date: November 17, 2022
    Inventors: Jonathan D. Yuen, Joyce C. Breger, David A. Stenger
  • Patent number: 10928351
    Abstract: An electrochemical cell includes a working electrode in contact with an aqueous electrolyte solution, a counter electrode in contact with the aqueous electrolyte solution, and a reference electrode in contact with the aqueous electrolyte solution. The working electrode comprises a plasma modified epitaxial synthesized graphene surface fabricated on SiC.
    Type: Grant
    Filed: July 30, 2018
    Date of Patent: February 23, 2021
    Assignee: The Government of the United States of America, as represented by the Secretary of the Navy
    Inventors: Scott A. Trammell, Rachael L. Myers-Ward, Sandra C. Hangarter, Daniel Zabetakis, David A. Stenger, David Kurt Gaskill, Scott G. Walton
  • Patent number: 10900891
    Abstract: Systems and methods are provided for identification of a detection event relevant in applications focused on real-time or near real-time reporting in a continuous monitoring application. A controller collects data from a plurality of sensors and compares recent data to background data to determine whether an event has occurred. A system in accordance with an embodiment of the present disclosure is considered to have detected an event of interest when at least a specified minimum number of sensors report a detection event at the same time.
    Type: Grant
    Filed: May 27, 2017
    Date of Patent: January 26, 2021
    Assignee: The Government of the United States of America, as represented by the Secretary of the Navy
    Inventors: Anthony P. Malanoski, Brandy J. White, Jeffrey S. Erickson, David A. Stenger
  • Publication number: 20200315025
    Abstract: Patterns of homogenous, electroless-plated metals within and on one or both sides of a porous substrate (such as nanocellulose sheets) enable the formation of an matrix of metal within pores of the substrate that can connect patterns on both sides of the substrate. These can serve as circuits with applications in, for example, wearable electronics.
    Type: Application
    Filed: March 24, 2020
    Publication date: October 1, 2020
    Inventors: Jonathan D. Yuen, David A. Stenger, Daniel Zabetakis, Scott Walper, Banahalli R. Ratna
  • Publication number: 20190033247
    Abstract: An electrochemical cell includes a working electrode in contact with an aqueous electrolyte solution, a counter electrode in contact with the aqueous electrolyte solution, and a reference electrode in contact with the aqueous electrolyte solution. The working electrode comprises a plasma modified epitaxial synthesized graphene surface fabricated on SiC.
    Type: Application
    Filed: July 30, 2018
    Publication date: January 31, 2019
    Inventors: Scott A. Trammell, Rachael L. Myers-Ward, Sandra C. Hangarter, Daniel Zabetakis, David A. Stenger, David Kurt Gaskill, Scott G. Walton
  • Patent number: 9857294
    Abstract: Described herein is an approach using inexpensive, disposable chemical sensor probes that can be mounted on a small unmanned aerial vehicles (UAVs) and used to analyze a site (such as one known or suspected to contain explosive residue, spilled material or contaminated soil) without the need for a person to conduct ground operations at the site. The method involves contacting a soil or a surface with a filter paper wetted with a solvent, then subjecting the filter paper to spectroscopy, thus detecting a possible variation indicative of one or more analytes, wherein the solvent is a deep eutectic solvents consisting of a mixture of ethylene glycol and choline chloride.
    Type: Grant
    Filed: November 18, 2016
    Date of Patent: January 2, 2018
    Assignee: The United States of America, as represented by the Secretary of the Navy
    Inventors: Daniel Zabetakis, Scott A. Trammell, Walter J. Dressick, David A. Stenger, Jasenka Verbarg
  • Patent number: 9857293
    Abstract: Described herein is an approach using inexpensive, disposable chemical sensor probes that can be mounted on a small unmanned aerial vehicles (UAVs) and used to analyze a site (such as one known or suspected to contain explosive residue, spilled material or contaminated soil) without the need for a person to conduct ground operations at the site. The method involves contacting a soil or a surface with a filter paper wetted with a solvent, then subjecting the filter paper to voltammetry and/or spectroscopy, thus detecting a possible variation indicative of one or more analytes, wherein the solvent is the deep eutectic solvent consisting of a mixture of ethylene glycol and choline chloride.
    Type: Grant
    Filed: November 18, 2016
    Date of Patent: January 2, 2018
    Assignee: The United States of America, as represented by the Secretary of the Navy
    Inventors: Daniel Zabetakis, Scott A. Trammell, Walter J. Dressick, David A. Stenger, Jasenka Verbarg
  • Publication number: 20170343471
    Abstract: Systems and methods are provided for identification of a detection event relevant in applications focused on real-time or near real-time reporting in a continuous monitoring application. A controller collects data from a plurality of sensors and compares recent data to background data to determine whether an event has occurred. A system in accordance with an embodiment of the present disclosure is considered to have detected an event of interest when at least a specified minimum number of sensors report a detection event at the same time.
    Type: Application
    Filed: May 27, 2017
    Publication date: November 30, 2017
    Inventors: Anthony P. Malanoski, Brandy J. White, Jeffrey S. Erickson, David A. Stenger
  • Publication number: 20170074825
    Abstract: Described herein is an approach using inexpensive, disposable chemical sensor probes that can be mounted on a small unmanned aerial vehicles (UAVs) and used to analyze a site (such as one known or suspected to contain explosive residue, spilled material or contaminated soil) without the need for a person to conduct ground operations at the site. The method involves contacting a soil or a surface with a filter paper wetted with a solvent, then subjecting the filter paper to voltammetry and/or spectroscopy, thus detecting a possible variation indicative of one or more analytes, wherein the solvent is the deep eutectic solvent consisting of a mixture of ethylene glycol and choline chloride.
    Type: Application
    Filed: November 18, 2016
    Publication date: March 16, 2017
    Inventors: Daniel Zabetakis, Scott A. Trammell, Walter J. Dressick, David A. Stenger, Jasenka Verbarg
  • Publication number: 20170074785
    Abstract: Described herein is an approach using inexpensive, disposable chemical sensor probes that can be mounted on a small unmanned aerial vehicles (UAVs) and used to analyze a site (such as one known or suspected to contain explosive residue, spilled material or contaminated soil) without the need for a person to conduct ground operations at the site. The method involves contacting a soil or a surface with a filter paper wetted with a solvent, then subjecting the filter paper to spectroscopy, thus detecting a possible variation indicative of one or more analytes, wherein the solvent is a deep eutectic solvents consisting of a mixture of ethylene glycol and choline chloride.
    Type: Application
    Filed: November 18, 2016
    Publication date: March 16, 2017
    Inventors: Daniel Zabetakis, Scott A. Trammell, Walter J. Dressick, David A. Stenger, Jasenka Verbarg
  • Patent number: 9557296
    Abstract: Described herein is an approach using inexpensive, disposable chemical sensor probes that can be mounted on a small unmanned aerial vehicles (UAVs) and used to analyze a site (such as one known or suspected to contain explosive residue, spilled material or contaminated soil) without the need for a person to conduct ground operations at the site. The method involves contacting a soil or a surface with a filter paper wetted with a solvent, then subjecting the filter paper to voltammetry and/or spectroscopy, thus detecting a possible variation indicative of one or more analytes, wherein the solvent is selected from the group consisting of polar aprotic or protic solvents having a boiling point of at least 100° C., room temperature ionic liquids, and deep eutectic solvents.
    Type: Grant
    Filed: August 27, 2014
    Date of Patent: January 31, 2017
    Assignee: The United States of America, as represented by the Secretary of the Navy
    Inventors: Daniel Zabetakis, Scott A. Trammell, Walter J. Dressick, David A. Stenger, Jasenka Verbarg
  • Patent number: 9430610
    Abstract: The present invention relates to pathogen detection and identification by use of DNA resequencing microarrays. The present invention also provides resequencing microarray chips for differential diagnosis and serotyping of pathogens present in a biological sample. The present invention further provides methods of detecting the presence and identity of pathogens present in a biological sample.
    Type: Grant
    Filed: April 10, 2008
    Date of Patent: August 30, 2016
    Assignee: The United States of America, as represented by the Secretary of the Navy
    Inventors: Brian K Agan, Eric H Hanson, Russell P Kruzelock, Baochuan Lin, Robb K Rowley, Donald Seto, David A Stenger, Jennifer Johnson, Clark J Tibbetts, Dzung C Thach, Gary J Vora, Elizabeth A Walter, Zheng Wang
  • Publication number: 20160061775
    Abstract: Described herein is an approach using inexpensive, disposable chemical sensor probes that can be mounted on a small unmanned aerial vehicles (UAVs) and used to analyze a site (such as one known or suspected to contain explosive residue, spilled material or contaminated soil) without the need for a person to conduct ground operations at the site. The method involves contacting a soil or a surface with a filter paper wetted with a solvent, then subjecting the filter paper to voltammetry and/or spectroscopy, thus detecting a possible variation indicative of one or more analytes, wherein the solvent is selected from the group consisting of polar aprotic or protic solvents having a boiling point of at least 100° C., room temperature ionic liquids, and deep eutectic solvents.
    Type: Application
    Filed: August 27, 2014
    Publication date: March 3, 2016
    Applicant: The Government of the United States of America, as represented by the Secretary of the Navy
    Inventors: Daniel Zabetakis, Scott A. Trammell, Walter J. Dressick, David A. Stenger, Jasenka Verbarg
  • Patent number: 9096849
    Abstract: A method of: providing a solid surface having a dendrimer molecule bound thereto and a single-stranded probe nucleic acid immobilized to the dendrimer; contacting the solid surface with a sample suspected or known to contain a double-stranded complimentary target nucleic acid; denaturing the target nucleic acids at thermal conditions and in a salt concentration sufficient to denature the target nucleic acids to produce denatured nucleic acids; and cooling the sample to allow hybridization of the denatured nucleic acids to the probe nucleic acids. An article having: one or more paramagnetic microbeads; a dendrimer molecule bound to the beads; and a probe nucleic acid immobilized to the dendrimer.
    Type: Grant
    Filed: May 21, 2007
    Date of Patent: August 4, 2015
    Assignee: The United States of America, as represented by the Secretary of the Navy
    Inventors: Marie J. Archer, Baochuan Lin, David A Stenger
  • Patent number: 8965710
    Abstract: An apparatus having within or as part of a housing; a sample port; a microarray port; a lysis module; a purification module for containing a solid phase for binding of oligonucleotides; a thermocycling module for containing a polymerase chain reaction; a fragmentation module; and a microarray module for holding a microarray and a liquid in contact with the microarray. The apparatus is configured to be coupled to a device for: pumping a liquid through, in order, the lysis, purification, thermocycling, fragmentation, and microarray modules; sonicating any contents of the lysis module; thermocycling the thermocycling module to perform the polymerase chain reaction; heating the fragmentation module to fragment any oligonucleotides contained therein; circulating a fluid over the surface of the microarray; and performing one or more washing or staining steps on the microarray.
    Type: Grant
    Filed: November 14, 2006
    Date of Patent: February 24, 2015
    Assignee: The United States of America, as represented by the Secretary of the Navy
    Inventors: Frances S Ligler, David A Stenger, Jeff Erickson, Marie Archer
  • Publication number: 20120035857
    Abstract: A computer-implemented biological sequence identifier (CIBSI) system and method for selecting a subsequence from biological sequence data according to at least one selection parameter. The at least one selection parameter corresponds to a likelihood of returning a meaningful result from a similarity search.
    Type: Application
    Filed: August 17, 2011
    Publication date: February 9, 2012
    Applicant: THE GOVERNMENT OF THE UNITED STATES OF AMERICA, AS REPRESENTED BY THE SECRETARY OF THE NAVY
    Inventors: David A. Stenger, Jennifer Thornton