Patents by Inventor Devon Murphy

Devon Murphy has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10023911
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Grant
    Filed: October 13, 2015
    Date of Patent: July 17, 2018
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Austin B. Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Publication number: 20160097093
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g.
    Type: Application
    Filed: October 13, 2015
    Publication date: April 7, 2016
    Inventors: Austin B. Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Patent number: 9175343
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Grant
    Filed: March 6, 2014
    Date of Patent: November 3, 2015
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Austin B. Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Publication number: 20140303016
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Application
    Filed: March 6, 2014
    Publication date: October 9, 2014
    Applicant: PACIFIC BIOSCIENCES OF CALIFORNIA, INC.
    Inventors: Austin B. Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Patent number: 8703422
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Grant
    Filed: February 24, 2011
    Date of Patent: April 22, 2014
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Austin Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Patent number: 8415128
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Grant
    Filed: July 26, 2011
    Date of Patent: April 9, 2013
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Patent number: 8182993
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Grant
    Filed: June 5, 2008
    Date of Patent: May 22, 2012
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Austin B. Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Publication number: 20120028250
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Application
    Filed: July 26, 2011
    Publication date: February 2, 2012
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Patent number: 8071346
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Grant
    Filed: October 31, 2007
    Date of Patent: December 6, 2011
    Assignee: Pacific Bioscience of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Publication number: 20110256631
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Application
    Filed: February 24, 2011
    Publication date: October 20, 2011
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Austin Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Patent number: 7998717
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Grant
    Filed: December 2, 2005
    Date of Patent: August 16, 2011
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Patent number: 7993895
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Grant
    Filed: December 1, 2006
    Date of Patent: August 9, 2011
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Publication number: 20110059505
    Abstract: Compositions that include polymerases with features for improving entry of nucleotide analogues into active site regions and for coordinating with the nucleotide analogues in the active site region are provided. Methods of making the polymerases and of using the polymerases in sequencing and DNA replication and amplification as well as kinetic models of polymerase activity and computer-implemented methods of using the models are also provided.
    Type: Application
    Filed: June 8, 2010
    Publication date: March 10, 2011
    Inventors: David K. Hanzel, Geoff Otto, Devon Murphy, Paul Peluso, Thang Pham, David R. Rank, Paul Mitsis, Fred Christians, Arek Bibillo, Insil Park, Sonya Clark, John Lyle
  • Publication number: 20090024331
    Abstract: Computer implemented methods, and systems performing such methods for processing signal data from analytical operations and systems, and particularly in processing signal data from sequence-by-incorporation processes to identify nucleotide sequences of template nucleic acids and larger nucleic acid molecules, e.g., genomes or fragments thereof.
    Type: Application
    Filed: June 5, 2008
    Publication date: January 22, 2009
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Austin B. Tomaney, Kenneth Mark Maxham, David Holden, Kevin Hester, Devon Murphy, Patrick Marks
  • Publication number: 20080176316
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Application
    Filed: October 31, 2007
    Publication date: July 24, 2008
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Publication number: 20080176241
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Application
    Filed: October 31, 2007
    Publication date: July 24, 2008
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Publication number: 20070196846
    Abstract: Compositions that include polymerases with features for improving entry of nucleotide analogues into active site regions and for coordinating with the nucleotide analogues in the active site region are provided. Methods of making the polymerases and of using the polymerases in sequencing and DNA replication and amplification as well as kinetic models of polymerase activity and computer-implemented methods of using the models are also provided.
    Type: Application
    Filed: December 21, 2006
    Publication date: August 23, 2007
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: David Hanzel, Geoff Otto, Devon Murphy, Paul Peluso, Thang Pham, David Rank, Paul Mitsis
  • Publication number: 20070161017
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Application
    Filed: December 1, 2006
    Publication date: July 12, 2007
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner
  • Publication number: 20070128133
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photodamage of one or more reactants in illuminated analytical reactions by one or more of incorporating photodamage mitigating agents within the reaction mixture and/or interrogating different observation regions of the reaction mixture for a period that is less than a photodamage threshold period.
    Type: Application
    Filed: December 2, 2005
    Publication date: June 7, 2007
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: John Eid, Devon Murphy, Geoffrey Otto, Stephen Turner