Abstract: The Intelligent Media Storage System disclosed herein protects computer programs and/or data files from being copied and used in an unauthorized manner. According to an example embodiment of the invention, an Intelligent Control Element (ICE) is installed between a computer system and a mass storage device. In a preferred embodiment, the ICE is disposed between a media storage device interface and the computer system interface. The ICE is responsible for writing data to and reading data from the protected mass storage devices of the IMSS. The ICE writes to and reads from the mass storage devices using special coding and encryption mechanisms. Each IMSS ICE uses different keys to code and encrypt data stored onto the mass storage device. Protected data is prepared for installation on an individual IMSS installed in one specific computer system, which is not usable by any other computer system (even when that other computer system is also equipped with another IMSS).