Patents by Inventor Dylan O'Connell

Dylan O'Connell has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20250075265
    Abstract: The invention relates to compounds, methods and compositions for improving on nucleic acid polymerization, including DNA replication by in vitro primer extension to generate, for example, polymers for nanopore-based single molecule sequencing of a DNA template. A nucleic acid polymerase reaction composition is provided with polymerization enhancement moieties, which allows enhanced DNA polymerase activity with nucleotide analogs, resulting in improved length of primer extension products for sequencing applications.
    Type: Application
    Filed: March 13, 2024
    Publication date: March 6, 2025
    Inventors: Mark Stamatios Kokoris, John Tabone, Melud Nabavi, Aaron Jacobs, Dylan O'Connell, Drew Goodman, Lacey Merrill, Jagadeeswaran Chandrasekar, Kendall Berg, Samantha Vellucci, Jessica Vellucci
  • Publication number: 20240417785
    Abstract: The invention relates to methods and compositions for improving on nucleic acid polymerization, including DNA replication by in vitro primer extension to generate, for example, polymers for nanopore-based single molecule sequencing of a DNA template. A nucleic acid polymerase reaction composition is provided with polymerization enhancement moieties, which allows enhanced DNA polymerase activity with nucleotide analogs, resulting in improved length of primer extension products for sequencing applications.
    Type: Application
    Filed: March 25, 2024
    Publication date: December 19, 2024
    Inventors: Mark Stamatios Kokoris, John Tabone, Melud Nabavi, Aaron Jacobs, Dylan O'Connell, Drew Goodman, Lacey Merrill, Jagadeeswaran Chandrasekar
  • Patent number: 11970731
    Abstract: The invention relates to compounds, methods and compositions for improving on nucleic acid polymerization, including DNA replication by in vitro primer extension to generate, for example, polymers for nanopore-based single molecule sequencing of a DNA template. A nucleic acid polymerase reaction composition is provided with polymerization enhancement moieties, which allows enhanced DNA polymerase activity with nucleotide analogs, resulting in improved length of primer extension products for sequencing applications.
    Type: Grant
    Filed: December 27, 2018
    Date of Patent: April 30, 2024
    Assignee: Roche Sequencing Solutions, Inc.
    Inventors: Mark Stamatios Kokoris, John Tabone, Melud Nabavi, Aaron Jacobs, Dylan O'Connell, Drew Goodman, Lacey Merrill, Jagadeeswaran Chandrasekar, Kendall Berg, Samantha Vellucci, Jessica Vellucci
  • Patent number: 11734839
    Abstract: A method and apparatus for removing breathing motion artifacts in imaging CT scans is disclosed. The method acquires raw imaging data from a CT scanner, and processes the raw CT imaging data by removing motion-induced artifacts via a motion model. Processing the imaging data may be achieved by initially estimating a 3D image to provide an estimate of raw sinogram image data, comparing the estimate to an actual CT sinogram, determining a difference between the sinograms, and iteratively reconstructing the 3D image by using the difference to alter the 3D image until the sinograms agree, wherein the 3D image moves according to the motion model.
    Type: Grant
    Filed: September 21, 2020
    Date of Patent: August 22, 2023
    Assignee: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventors: Daniel Low, Anand Santhanam, Dylan O'Connell
  • Publication number: 20220411458
    Abstract: Phosphoramidate-based monomers are provided for use in the synthesis of expandable polymers for nanopore-based sensing. Such monomers comprising a reporter construct that contain a first reporter code, a symmetrical chemical brancher bearing a translocation control element, and a second reporter code, wherein the ends of the reporter construct are attached to phosphoramidate-nucleoside. Related methods and products are also provided.
    Type: Application
    Filed: November 23, 2021
    Publication date: December 29, 2022
    Inventors: Brent Banasik, Cynthia Cech, Jagadeeswaran Chandrasekar, Drew Goodman, Aaron Jacobs, Mark Stamatios Kokoris, Svetlana Kritzer, Matthew Lopez, Cara Machacek, Lacey Merrill, Melud Nabavi, Dylan O'Connell, John Tabone, Jessica Vellucci
  • Publication number: 20220112548
    Abstract: The invention relates to compounds, methods and compositions for improving on nucleic acid polymerization, including DNA replication by in vitro primer extension to generate, for example, polymers for nanopore-based single molecule sequencing of a DNA template. A nucleic acid polymerase reaction composition is provided with polymerization enhancement moieties, which allows enhanced DNA polymerase activity with nucleotide analogs, resulting in improved length of primer extension products for sequencing applications.
    Type: Application
    Filed: December 21, 2021
    Publication date: April 14, 2022
    Inventors: Jagadeeswaran Chandrasekar, Drew Goodman, Aaron Jacobs, Mark Stamatios Kokoris, Lacey Merrill, Melud Nabavi, Dylan O'Connell, John Tabone
  • Publication number: 20210139966
    Abstract: The invention relates to methods and compositions for improving on nucleic acid polymerization, including DNA replication by in vitro primer extension to generate, for example, polymers for nanopore-based single molecule sequencing of a DNA template. A nucleic acid polymerase reaction composition is provided with polymerization enhancement moieties, which allows enhanced DNA polymerase activity with nucleotide analogs, resulting in improved length of primer extension products for sequencing applications.
    Type: Application
    Filed: December 20, 2018
    Publication date: May 13, 2021
    Inventors: Mark Stamatios Kokoris, John Tabone, Melud Nabavi, Aaron Jacobs, Dylan O'Connell, Drew Goodman, Lacey Merrill, Jagadeeswaran Chandrasekar
  • Publication number: 20210074007
    Abstract: A method and apparatus for removing breathing motion artifacts in imaging CT scans is disclosed. The method acquires raw imaging data from a CT scanner, and processes the raw CT imaging data by removing motion-induced artifacts via a motion model. Processing the imaging data may be achieved by initially estimating a 3D image to provide an estimate of raw sinogram image data, comparing the estimate to an actual CT sinogram, determining a difference between the sinograms, and iteratively reconstructing the 3D image by using the difference to alter the 3D image until the sinograms agree, wherein the 3D image moves according to the motion model.
    Type: Application
    Filed: September 21, 2020
    Publication date: March 11, 2021
    Applicant: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventors: Daniel Low, Anand Santhanam, Dylan O'Connell
  • Publication number: 20210062251
    Abstract: The invention relates to compounds, methods and compositions for improving on nucleic acid polymerization, including DNA replication by in vitro primer extension to generate, for example, polymers for nanopore-based single molecule sequencing of a DNA template. A nucleic acid polymerase reaction composition is provided with polymerization enhancement moieties, which allows enhanced DNA polymerase activity with nucleotide analogs, resulting in improved length of primer extension products for sequencing applications.
    Type: Application
    Filed: December 27, 2018
    Publication date: March 4, 2021
    Inventors: Mark Stamatios Kokoris, John Tabone, Melud Nabavi, Aaron Jacobs, Dylan O'Connell, Drew Goodman, Lacey Merrill, Jagadeeswaran Chandrasekar, Kendall Berg, Samantha Vellucci, Jessica Vellucci