Patents by Inventor Eduardo Olivares

Eduardo Olivares has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Systems and methods for genomic analysis
    Patent number: 11929149
    Abstract: Provided herein are methods for aligning raw genetic sequence data generated by a sequencing device. Also provided herein are methods and systems for quantifying the probability that possible alignments for one or more read pairs are correct, for calling known variants, and for detecting novel structural variants.
    Type: Grant
    Filed: August 4, 2016
    Date of Patent: March 12, 2024
    Assignee: ARC BIO, LLC
    Inventors: Alejandro Quiroz Zarate, Roberto Olivares-Amaya, Thomas James Watson, Jr., Helen Cecile Van Aggelen, Eduardo Coronado Sroka, Carlos Antonio Angulo Sermeno, Fernando Fimbres Jurado, Abraham Solis Garcia-Inda, Fernando Fontove Herrera, Pablo G. Coste
  • Method and system for characterization for female reproductive system-related conditions associated with microorganisms
    Patent number: 11001900
    Abstract: Embodiments of a method and/or system for characterizing one or more female reproductive system-related conditions can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process associated with the one or more female reproductive system-related conditions, based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing a female reproductive system-related characterization process for the one or more female reproductive system-related conditions, and/or determining one or more therapies.
    Type: Grant
    Filed: August 28, 2018
    Date of Patent: May 11, 2021
    Assignee: PSOMAGEN, INC.
    Inventors: Zachary Apte, Elisabeth Bik, Sara W. Bird, Luis E. Leon, Pamela A. Nieto, Victor Alegria-Mera, Cristian Bravo, Juan P. Cardenas, Paulo Covarrubias, Sarah L. Gupta, Kira Harman, Juan Jimenez, Felipe Melis-Arcos, Camila F. Navas, Harold Nunez, Eduardo Olivares, Nicolas Ordenes-Aenishanslins, Francisco J. Ossandon, Ignacio Varas, Patricia Vera-Wolf, Donna Marie B. Hongo, Laurens Kraal, Nathaniel A. Walton, Amanda Morton, Juan P. Bustamante, Kwasi Addae, Graham Gass, Katia Soto-Liebe, Juan A. Ugalde, Eduardo H. Morales, Daniel Almonacid, Jessica Richman
  • NORMALIZATION FOR SEQUENCING LIBRARIES
    Publication number: 20200263171
    Abstract: Embodiments of a method and/or system, such as for preparation of a normalized library for sequencing such as next-generation sequencing, can include one or more of: generating one or more normalized amplicon libraries; generating one or more normalized microbial community-associated libraries; and/or generating one or more normalized combined sequence libraries associated with amplicon-associated sequencing and microbial community-associated sequencing.
    Type: Application
    Filed: September 7, 2018
    Publication date: August 20, 2020
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Eduardo Morales, Rodrigo Ortiz, Nicolas Ordenes, Juan Jimenez, Cristian Bravo, Natalia Scioscia, Eduardo Olivares, Luis Leon, Paulo Covarrubias, Felipe Sepulveda, Felipe Melis
  • METHOD AND SYSTEM FOR LIBRARY PREPARATION WITH UNIQUE MOLECULAR IDENTIFIERS
    Publication number: 20200123539
    Abstract: Embodiments of a method 100 and/or system 200 or library preparation for sequencing associated with microorganisms can include: preparing a set of unique molecular identifier (UMI)-based molecules associated with one or more targets; preparing a set of sequencing-based primers; generating a set of tagged target molecules based on the set of UMI-based molecules and one or more samples associated with the one or more targets; and/or generating a set of sequencing-ready tagged target molecules based on the tagged target molecules and the set of sequencing-based primers.
    Type: Application
    Filed: June 20, 2018
    Publication date: April 23, 2020
    Inventors: Zachary APTE, Jessica RICHMAN, Daniel AL-MONACID, Juan JIMINEZ, Rodrigo ORTIZ, Eduardo MORALES, Paulo COVARRUBIAS, Eduardo OLIVARES, Nicolas ORDENES, Luis LEON
  • METHOD AND SYSTEM FOR CHARACTERIZATION FOR FEMALE REPRODUCTIVE SYSTEM-RELATED CONDITIONS ASSOCIATED WITH MICROORGANISMS
    Publication number: 20190078142
    Abstract: Embodiments of a method and/or system for characterizing one or more female reproductive system-related conditions can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process associated with the one or more female reproductive system-related conditions, based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing a female reproductive system-related characterization process for the one or more female reproductive system-related conditions, and/or determining one or more therapies.
    Type: Application
    Filed: August 28, 2018
    Publication date: March 14, 2019
    Inventors: Zachary Apte, Elisabeth Bik, Sara W. Bird, Luis E. Leon, Pamela A. Nieto, Victor Alegria-Mera, Cristian Bravo, Juan P. Cardenas, Paulo Covarrubias, Sarah L. Gupta, Kira Harman, Juan Jimenez, Felipe Melis-Arcos, Camila F. Navas, Harold Nunez, Eduardo Olivares, Nicolas Ordenes-Aenishanslins, Francisco J. Ossandon, Ignacio Varas, Patricia Vera-Wolf, Donna Marie B. Hongo, Laurens Kraal, Nathaniel A. Walton, Amanda Morton, Juan P. Bustamante, Kwasi Addae, Graham Gass, Katia Soto-Liebe, Juan A. Ugalde, Eduardo H. Morales, Daniel Almonacid, Jessica Richman
  • NORMALIZATION FOR SEQUENCING LIBRARIES
    Publication number: 20190078085
    Abstract: Embodiments of a method and/or system, such as for preparation of a normalized library for sequencing such as next-generation sequencing, can include one or more of: generating one or more normalized amplicon libraries; generating one or more normalized microbial community-associated libraries; and/or generating one or more normalized combined sequence libraries associated with amplicon-associated sequencing and microbial community-associated sequencing.
    Type: Application
    Filed: September 7, 2018
    Publication date: March 14, 2019
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Eduardo Morales, Rodrigo Ortiz, Nicolas Ordenes, Juan Jimenez, Cristian Bravo, Natalia Scioscia, Eduardo Olivares, Luis Leon, Paulo Covarrubias, Felipe Sepulveda, Felipe Melis
  • METHOD AND SYSTEM FOR LIBRARY PREPARATION WITH UNIQUE MOLECULAR IDENTIFIERS
    Publication number: 20180362967
    Abstract: Embodiments of a method 100 and/or system 200 or library preparation for sequencing associated with microorganisms can include: preparing a set of unique molecular identifier (UMI)-based molecules associated with one or more targets; preparing a set of sequencing-based primers; generating a set of tagged target molecules based on the set of UMI-based molecules and one or more samples associated with the one or more targets; and/or generating a set of sequencing-ready tagged target molecules based on the tagged target molecules and the set of sequencing-based primers.
    Type: Application
    Filed: June 20, 2018
    Publication date: December 20, 2018
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Juan Jimenez, Rodrigo Ortiz, Eduardo Morales, Paulo Covarrubias, Eduardo Olivares, Nicolas Ordenes, Luis Leon