Abstract: Systems and methods herein provide for rapid patient information to healthcare providers such that the healthcare providers can make more informed diagnoses. One method includes storing gene sequencing data and called genetic variants of a patient in a data structure. The method also includes receiving a request from a healthcare provider for results of a test that reports at least a portion of the called genetic variants in relation to a diagnosis of the patient by the healthcare provider, and delivering the results of the test to the healthcare provider if a quality control value of said at least a portion of the called genetic variants meets or exceeds a predetermined threshold of quality for assisting the healthcare provider.

Abstract: A machine accesses first results of a first analysis performed by a first version of a first analytical tool on sequenced data of a genetic sample. A second analytical tool is to process results of the first analytical tool. The machine determines that a second analysis is to be performed by a second version of the first analytical tool upon the sequenced data of the genetic sample. A third analytical tool into which second results of the second analytical tool are to be inputted specifies a minimum version of the first analytical tool, and the determining that the second analysis is to be performed may be based on the first version failing to satisfy the minimum version, the second version satisfying the minimum version, or both. The machine then causes the second analysis to be performed by the second version of the first analytical tool on the sequenced data.

Abstract: Data including a text file is received. The text file is arranged in an extensible format and includes a plurality of metadata lines, a header line, and a plurality of content lines. Metadata from the metadata lines is mapped to a plurality of metadata tables in a database that are formed according to a relational database schema using prefix parameters from each metadata line. Content from the content lines is mapped to a plurality of content tables in the database that are formed according to the relational database schema using the header line. A first subset of the content tables have a static structure and a second subset of the content tables have a dynamic structure. Related apparatus, systems, techniques and articles are also described.

Abstract: A text file is received. The text file is arranged in an extensible format and includes a plurality of metadata lines, a header line, and a plurality of content lines. Keys are retrieved from the content lines. For each key, a data type and a number from at least one metadata table is retrieved. Using a combination of each key and the corresponding data type and number, a column title is derived. Upon verification that the derived column title does not already exist, a column for each key is generated in a content table having a dynamic structure in a relational database schema. The column has the derived column title, a column type based on the corresponding retrieved data type, and the number of generated columns determined by the corresponding retrieved number. The retrieved value is mapped into the column associated with the corresponding key.

Abstract: Data including a text file is received. The text file is arranged in an extensible format and includes a plurality of metadata lines, a header line, and a plurality of content lines. Metadata from the metadata lines is mapped to a plurality of metadata tables in a database that are formed according to a relational database schema using prefix parameters from each metadata line. Content from the content lines is mapped to a plurality of content tables in the database that are formed according to the relational database schema using the header line. A first subset of the content tables have a static structure and a second subset of the content tables have a dynamic structure. Related apparatus, systems, techniques and articles are also described.

Abstract: A text file is received. The text file is arranged in an extensible format and includes a plurality of metadata lines, a header line, and a plurality of content lines. Keys are retrieved from the content lines. For each key, a data type and a number from at least one metadata table is retrieved. Using a combination of each key and the corresponding data type and number, a column title is derived. Upon verification that the derived column title does not already exist, a column for each key is generated in a content table having a dynamic structure in a relational database schema. The column has the derived column title, a column type based on the corresponding retrieved data type, and the number of generated columns determined by the corresponding retrieved number. The retrieved value is mapped into the column associated with the corresponding key.