Patents by Inventor Fouad A. Siddiqi

Fouad A. Siddiqi has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 7807375
    Abstract: The present invention provides a method for determining nucleic acid sequences of a template nucleic acid that requires no prior knowledge of the nucleic acid sequence present in the template nucleic acid. The method is based on combining information about the mass of a fragment, the mass of any one nucleotide and the combinations thereof, and the sequence specificity of a nucleotide cutter, either enzymatic or chemical cutter, to determine a sequence of a nucleic acid fragment. This method allows for de novo detection of sequences in a target nucleic acid without requiring any prior sequence information. This method is called Partial Sequencing by Fragmentation (PSBF) and it works by fragmenting a target into oligo- or polynucleotides whose masses or lengths are uniquely associated with known sequences. The identities of these sequences are determined solely by the specific fragmentation method used, and are always independent of the target.
    Type: Grant
    Filed: October 28, 2008
    Date of Patent: October 5, 2010
    Assignee: Trustees of Boston University
    Inventors: Charles R Cantor, Fouad A Siddiqi
  • Publication number: 20090312358
    Abstract: The present invention is directed to methods of treatment and/or management of diarrhea, such as chronic diarrhea using sequential administration of opioid agonists to suppress gut mobility and opioid antagonists to reverse the effect to controllably allow bowel movements. The agonists and antagonists are administered with a time interval in between the administration or between the release of the drugs from a pharmaceutical composition. The invention is further directed to methods of controlling, treating or managing side effects caused by the opioid agonists, specifically the side effects resulting from mast cell activation and/or granulation.
    Type: Application
    Filed: March 22, 2007
    Publication date: December 17, 2009
    Applicant: TRUSTEES OF BOSTON UNIVERSITY
    Inventor: Fouad A. Siddiqi
  • Publication number: 20090075288
    Abstract: The present invention provides a method for determining nucleic acid sequences of a template nucleic acid that requires no prior knowledge of the nucleic acid sequence present in the template nucleic acid. The method is based on combining information about the mass of a fragment, the mass of any one nucleotide and the combinations thereof, and the sequence specificity of a nucleotide cutter, either enzymatic or chemical cutter, to determine a sequence of a nucleic acid fragment. This method allows for de novo detection of sequences in a target nucleic acid without requiring any prior sequence information. This method is called Partial Sequencing by Fragmentation (PSBF) and it works by fragmenting a target into oligo- or polynucleotides whose masses or lengths are uniquely associated with known sequences. The identities of these sequences are determined solely by the specific fragmentation method used, and are always independent of the target.
    Type: Application
    Filed: October 28, 2008
    Publication date: March 19, 2009
    Applicant: TRUSTEES OF BOSTON UNIVERSITY
    Inventors: Charles R. Cantor, Fouad A. Siddiqi
  • Patent number: 7470517
    Abstract: The present invention provides a method for determining nucleic acid sequences of a template nucleic acid that requires no prior knowledge of the nucleic acid sequence present in the template nucleic acid. The method is based on combining information about the mass of a fragment, the mass of any one nucleotide and the combinations thereof, and the sequence specificity of a nucleotide cutter, either enzymatic or chemical cutter, to determine a sequence of a nucleic acid fragment. This method allows for de novo detection of sequences in a target nucleic acid without requiring any prior sequence information. This method is called Partial Sequencing by Fragmentation (PSBF) and it works by fragmenting a target into oligo- or polynucleotides whose masses or lengths are uniquely associated with known sequences. The identities of these sequences are determined solely by the specific fragmentation method used, and are always independent of the target.
    Type: Grant
    Filed: April 8, 2005
    Date of Patent: December 30, 2008
    Assignee: Trustees of Boston University
    Inventors: Charles R. Cantor, Fouad A. Siddiqi
  • Publication number: 20080096194
    Abstract: The present invention provides a method for determining nucleic acid sequences of a template nucleic acid that requires no prior knowledge of the nucleic acid sequence present in the template nucleic acid. The method is based on combining information about the mass of a fragment, the mass of any one nucleotide and the combinations thereof, and the sequence specificity of a nucleotide cutter, either enzymatic or chemical cutter, to determine a sequence of a nucleic acid fragment. This method allows for de novo detection of sequences in a target nucleic acid without requiring any prior sequence information. This method is called Partial Sequencing by Fragmentation (PSBF) and it works by fragmenting a target into oligo- or polynucleotides whose masses or lengths are uniquely associated with known sequences. The identities of these sequences are determined solely by the specific fragmentation method used, and are always independent of the target.
    Type: Application
    Filed: April 8, 2005
    Publication date: April 24, 2008
    Applicant: THE TRUSTEES OF BOSTON UNIVERSITY
    Inventors: Charles R. Cantor, Fouad A. Siddiqi
  • Patent number: 6660229
    Abstract: Methods and kits that use nucleotide analogs to confer increased accuracy and improved resolution in the analysis and sequencing of oligonucleotide mixtures are provided.
    Type: Grant
    Filed: June 13, 2001
    Date of Patent: December 9, 2003
    Assignee: The Trustees of Boston University
    Inventors: Charles R. Cantor, Fouad A. Siddiqi
  • Publication number: 20020045178
    Abstract: Methods and kits that use nucleotide analogs to confer increased accuracy and improved resolution in the analysis and sequencing of oligonucleotide mixtures are provided.
    Type: Application
    Filed: June 13, 2001
    Publication date: April 18, 2002
    Applicant: The Trustees of Boston University
    Inventors: Charles R. Cantor, Fouad A. Siddiqi