Patents by Inventor Frank Bergmann

Frank Bergmann has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 7413855
    Abstract: The present application is directed to a method for performing a bisulfite reaction to determine methylation positions in a nucleic acid, i.e. methylated and non-methylated cytosines, whereby the nucleic acid is incubated in a solution comprising the nucleic acid for a time period of 1.5 to 3.5 hours at a temperature between 70 and 90° C., whereby the concentration of bisulfite in the solution is between 3 M and 6.25 M and whereby the pH value of the solution is between 5.0 and 6.0 whereby the nucleic acid, i.e. the cytosine bases in the nucleic acid, are deaminated. Then the solution comprising the deaminated nucleic acid is desulfonated and preferably desalted. The application is further related to a solution comprising bisulfite with a certain pH and uses thereof as well as a kit comprising the solution.
    Type: Grant
    Filed: January 28, 2004
    Date of Patent: August 19, 2008
    Assignee: Roche Molecular Systems, Inc.
    Inventors: Frank Bergmann, Christine Markert-Hahn, Joerg Kleibler, Dirk Block
  • Publication number: 20080038745
    Abstract: The present invention is related to compounds comprising six-membered rings capable of being incorporated into nucleic acids. Particularly, the six-membered ring is a derivative of cyclohexane, cyclohexene, tetrahydropyran, tetrahydrothiopyran or piperidine. These compounds may be used to build up oligomeric compounds. The invention is further related to uses of these oligomeric compounds for hybridization and as probes. In addition, methods for the detection of nucleic acids are provided wherein the oligomeric compounds are used.
    Type: Application
    Filed: August 29, 2007
    Publication date: February 14, 2008
    Inventors: Frank Bergmann, Horst Donner, Herbert Von Der Eltz, Dieter Heindl, Piet Herdewijn
  • Patent number: 7329491
    Abstract: A method for purification of a nucleic acid comprising the steps of (a) adsorbing on a substrate the nucleic acid from a composition containing (i) an aqueous buffer, (ii) salts in a high concentration, (iii) a water-miscible, non-acidic organic compound, and (iv) the nucleic acid; (b) optionally washing with a washing solution the substrate with the adsorbed nucleic acid; (c) contacting the substrate with the adsorbed nucleic acid with a solution containing salts in a lower concentration compared to the composition of step (a), thereby desorbing the nucleic acid from the substrate; (d) separating the solution with the desorbed nucleic acid from the substrate, thereby purifying the nucleic acid; and optionally (e) precipitating the desorbed nucleic acid from the solution of step (d) and isolating the precipitated nucleic acid, thereby further purifying the nucleic acid.
    Type: Grant
    Filed: October 12, 2004
    Date of Patent: February 12, 2008
    Assignee: Roche Diagnostics Operations, Inc.
    Inventors: Michael Kirchgesser, Frank Bergmann, Thomas Walter, Kurt Weindel, Ralf Zielenski, Emad Sarofim
  • Patent number: 7276592
    Abstract: The present invention is related to compounds comprising six-membered rings capable of being incorporated into nucleic acids. Particularly, the six-membered ring is a derivative of cyclohexane, cyclohexene, tetrahydropyran, tetrahydrothiopyran or piperidine. These compounds may be used to build up oligomeric compounds. The invention is further related to uses of these oligomeric compounds for hybridization and as probes. In addition, methods for the detection of nucleic acids are provided wherein the oligomeric compounds are used.
    Type: Grant
    Filed: April 1, 2004
    Date of Patent: October 2, 2007
    Assignee: Roche Diagnostics Operations, Inc.
    Inventors: Frank Bergmann, Horst Donner, Herbert Von Der Eltz, Dieter Heindl, Piet Herdewijn
  • Publication number: 20070196852
    Abstract: The current invention restates substituted indole nucleosides as both terminal as well as internal building blocks of labeled oligonucleotide probes for the detection, analysis and quantitation of nucleic acids. The substituent comprises a linker and a detectable group or a linker and a reactive group for post synthesis coupling. These modified nucleosides grant access to a wide application area. These new substituted indole nucleosides can be used as labeling reagents for the facile preparation of e.g. optimized hybridization probes, Taqman-probes, or molecular beacon probes.
    Type: Application
    Filed: February 16, 2007
    Publication date: August 23, 2007
    Inventors: Dieter Heindl, Frank Bergmann, Hans-Peter Josel, Dirk Kessler, Gunter Lampert, Christian Weilke
  • Patent number: 7238795
    Abstract: The present invention is in the field of nucleic acid binding compounds comprising 7-substituted 7-deaza-8aza-2,6-diamino-purine bases, compounds useful for the preparation of such compounds, various uses thereof and methods for the determination of nucleic acids using said compounds in the field of diagnostics.
    Type: Grant
    Filed: July 31, 2001
    Date of Patent: July 3, 2007
    Assignee: Roche Molecular Systems, Inc.
    Inventors: Frank Seela, Frank Bergmann, Herbert Von Der Eltz, Dieter Heindl, Christoph Seidel, Georg Becher
  • Publication number: 20070099220
    Abstract: The present invention is directed to the use of a benzimidazolium compound comprising a side chain at at least one of its N-residues, said chain being either a Cn-alkyl or a substituted Cn-alkyl, characterized in that preferably n is ?3, as an additive for a nucleic acid amplification reaction.
    Type: Application
    Filed: October 16, 2006
    Publication date: May 3, 2007
    Inventors: Christian Birkner, Frank Bergmann, Herbert von der Eltz
  • Patent number: 7182525
    Abstract: The invention relates to a coupling unit for coupling an optical transmitting and/or receiving module to an optical fiber. The coupling unit has a connecting area that can be connected to a transmitting and/or receiving module, and a holding area that holds an optical fiber. A transparent coupling area is provided, which is formed as an integral component of the coupling unit, and via which light can be coupled directly between an optical fiber that is inserted into the holding area and a transmitting and/or receiving module that is coupled directly to it. The coupling area preferably has a matched refractive index. The coupling unit is preferably in the form of an injection-molded part.
    Type: Grant
    Filed: October 1, 2003
    Date of Patent: February 27, 2007
    Assignee: Finisar Coproration
    Inventors: Frank Bergmann, Andreas Stockhaus, Michael-Peter Pohnke, Andreas Steffensen
  • Patent number: 7169553
    Abstract: Within oligonucleotides 2-azapurine and especially 2-azaadenine bases form specifically base pairs with guanine. This base pair is of analogous stability as an adenine-thymine but less stable than a guanine-cytosine base pair. Therefore, the incorporation of 2-azaadenine residues into oligonucleotides instead of cytosine leads specifically to hybridization complexes with nucleic acids with homogenous stability. This is useful for the adaptation of the stabilities of different oligonucleotide sequences in all kinds of hybridization techniques, for example in oligomer chip technology.
    Type: Grant
    Filed: August 28, 2000
    Date of Patent: January 30, 2007
    Assignee: Roche Diagnostics, GmbH
    Inventors: Frank Seela, Helmut Rosenmeyer, Enno Schweinberger, Dieter Heindl, Frank Bergmann
  • Publication number: 20070015725
    Abstract: Within oligonucleotides 2-azapurine and especially 2-azaadenine bases form specifically base pairs with guanine. This base pair is of analogous stability as an adenine-thymine but less stable than a guanine-cytosine base pair. Therefore, the incorporation of 2-azaadenine residues into oligonucleotides instead of cytosine leads specifically to hybridization complexes with nucleic acids with homogenous stability. This is useful for the adaptation of the stabilities of different oligonucleotide sequences in all kinds of hybridization techniques, for example in oligomer chip technology.
    Type: Application
    Filed: May 25, 2006
    Publication date: January 18, 2007
    Applicant: Roche Diagnostics, GMBH
    Inventors: Frank Seela, Helmut Rosemeyer, Enno Schweinberger, Dieter Heindl, Frank Bergmann
  • Publication number: 20060135462
    Abstract: The present invention is directed to a nucleic acid binding compound comprising N8- or C8-linked purine bases or structurally related heterocycles, a compound useful for the preparation of such compound, a binding product of this nucleic acid binding compound with a nucleic acid, a method for the determination of a nucleic acid using said compound, and several uses of 8-linked purine bases and structurally related heterocycles. Compounds according to the present invention have advantageous properties when used in hybridization methods.
    Type: Application
    Filed: January 23, 2006
    Publication date: June 22, 2006
    Applicant: ROCHE MOLECULAR SYSTEMS, INC.
    Inventors: Frank Seela, Frank Bergmann, Dieter Heindl, Herbert Von Der Eltz
  • Patent number: 7063945
    Abstract: The present invention is directed to a nucleic acid binding compound comprising N8- or C8-linked purine bases or structurally related heterocycles, a compound useful for the preparation of such compound, a binding product of this nucleic acid binding compound with a nucleic acid, a method for the determination of a nucleic acid using said compound, and several uses of 8-linked purine bases and structurally related heterocycles. Compounds according to the present invention have advantageous properties when used in hybridization methods.
    Type: Grant
    Filed: March 27, 2001
    Date of Patent: June 20, 2006
    Assignee: Roche Molecular Systems, Inc
    Inventors: Frank Seela, Harald Debelak, Frank Bergmann, Dieter Heindl, Herbert Von Der Eltz
  • Publication number: 20060058518
    Abstract: The present application is directed to a method for performing a bisulfite reaction to determine methylation positions in a nucleic acid, i.e. methylated and non-methylated cytosines, whereby the nucleic acid is incubated in a solution comprising the nucleic acid for a time period of 1.5 to 3.5 hours at a temperature between 70 and 90° C., whereby the concentration of bisulfite in the solution is between 3 M and 6.25 M and whereby the pH value of the solution is between 5.0 and 6.0 whereby the nucleic acid, i.e. the cytosine bases in the nucleic acid, are deaminated. Then the solution comprising the deaminated nucleic acid is desulfonated and preferably desalted. The application is further related to a solution comprising bisulfite with a certain pH and uses thereof as well as a kit comprising the solution.
    Type: Application
    Filed: January 28, 2004
    Publication date: March 16, 2006
    Inventors: Frank Bergmann, Christine Market-Hahn, Joerg Kleiber, Dirk Block
  • Patent number: 6929697
    Abstract: The invention relates to a device for hot dip coating metal strand (1), particularly strip steel, in which the metal strand (1) can be vertically guided through a reservoir (3), which accommodates the molten coating metal (2), and though a guide channel (4) connected upstream therefrom. An electromagnetic inductor (5) is mounted in the area of the guide channel (4) and in order to retain the coating metal (2) inside the reservoir (3), can induce induction currents in the coating metal (2) by an electromagnetic traveling field. While interacting with the electromagnetic traveling field, the induction currents exert an electromagnetic force. The inductor (5) has at least two main coils (6) that are arranged in succession in movement direction (X) of the metal strand (1), and has at least two correction coils (7) for controlling the position of the metal strand (1) inside the guide channel (4) in direction (N), which is normal to the surface of the metal strand (1).
    Type: Grant
    Filed: February 20, 2003
    Date of Patent: August 16, 2005
    Assignee: SMS Demag AG
    Inventors: Frank Bergmann, Michael Zielenbach, Walter Trakowski, Olaf Norman Jepsen, Holger Behrens
  • Publication number: 20050076835
    Abstract: The invention relates to a device for hot dip coating metal strands (1), particularly strip steel, in which the metal strand (1) can be vertically guided through a reservoir (3), which accommodates the molten coating metal (2), and though a guide channel (4) connected upstream therefrom. An electromagnetic inductor (5) is mounted in the area of the guide channel (4) and in order to retain the coating metal (2) inside the reservoir (3), can induce induction currents in the coating metal (2) by means of an electromagnetic traveling field. While interacting with the electromagnetic traveling field, said induction currents exert an electromagnetic force. The inductor (5) has at least two main coils (6) that are arranged in succession in movement direction (X) of the metal strand (1), and has at least two correction coils (7) for controlling the position of the metal strand (1) inside the guide channel (4) in direction (N), which is normal to the surface of the metal strand (1).
    Type: Application
    Filed: February 20, 2003
    Publication date: April 14, 2005
    Inventors: Frank Bergmann, Michael Zielenbach, Walter Trakowski, Olaf Jepsen, Holger Behrens
  • Publication number: 20050079535
    Abstract: A method for purification of a nucleic acid comprising the steps of (a) adsorbing on a substrate the nucleic acid from a composition containing (i) an aqueous buffer, (ii) salts in a high concentration, (iii) a water-miscible, non-acidic organic compound, and (iv) the nucleic acid; ( b) optionally washing with a washing solution the substrate with the adsorbed nucleic acid; (c) contacting the substrate with the adsorbed nucleic acid with a solution containing salts in a lower concentration compared to the composition of step (a), thereby desorbing the nucleic acid from the substrate; (d) separating the solution with the desorbed nucleic acid from the substrate, thereby purifying the nucleic acid; and optionally (e) precipitating the desorbed nucleic acid from the solution of step (d) and isolating the precipitated nucleic acid, thereby further purifying the nucleic acid.
    Type: Application
    Filed: October 12, 2004
    Publication date: April 14, 2005
    Inventors: Michael Kirchgesser, Frank Bergmann, Thomas Walter, Kurt Weindel, Ralf Zielenski, Emad Sarofim
  • Publication number: 20050004078
    Abstract: The present invention is related to compounds comprising six-membered rings capable of being incorporated into nucleic acids. Particularly, the six-membered ring is a derivative of cyclohexane, cyclohexene, tetrahydropyran, tetrahydrothiopyran or piperidine. These compounds may be used to build up oligomeric compounds. The invention is further related to uses of these oligomeric compounds for hybridization and as probes. In addition, methods for the detection of nucleic acids are provided wherein the oligomeric compounds are used.
    Type: Application
    Filed: April 1, 2004
    Publication date: January 6, 2005
    Inventors: Frank Bergmann, Horst Donner, Herbert Von Der Eltz, Dieter Heindl, Piet Herdewijn
  • Publication number: 20040191794
    Abstract: The present invention is directed to a method for the determination of at least 3 analytes using specific binding partners. Combinations of detectable labels are coupled to the binding partners assuring that each binding partner molecule is coupled with only one detectable label. This allows the determination of more different analytes than different labels used by not limiting the range of useable labels. The present invention is also related to kits, composition of matters and their use.
    Type: Application
    Filed: February 26, 2004
    Publication date: September 30, 2004
    Inventors: Kurt Weindel, Stefan Kraiss, Frank Bergmann, Hans-Peter Josel, Dieter Heindl
  • Publication number: 20040171820
    Abstract: The present invention is directed to a nucleic acid binding compound comprising N8- or C8-linked purine bases or structurally related heterocycles, a compound useful for the preparation of such compound, a binding product of this nucleic acid binding compound with a nucleic acid, a method for the determination of a nucleic acid using said compound, and several uses of 8-linked purine bases and structurally related heterocycles. Compounds according to the present invention have advantageous properties when used in hybridization methods.
    Type: Application
    Filed: September 10, 2002
    Publication date: September 2, 2004
    Inventors: Frank Seela, Harald Debelak, Frank Bergmann, Dieter Heindl, Herbert Von Der Eltz
  • Publication number: 20040157247
    Abstract: The present invention is related to compounds comprising mannitol or glucitol derivatives which may be used to build up oligomeric compounds. The invention is further related to uses of these oligomeric compounds for hybridization and as probes. In addition, methods for the detection of nucleic acids are disclosed wherein the oligomeric compounds are used.
    Type: Application
    Filed: December 5, 2003
    Publication date: August 12, 2004
    Applicant: ROCHE MOLECULAR SYSTEMS, INC
    Inventors: Frank Bergmann, Herbert Von Der Eltz, Christoph Seidel, Kurt Weindel