Patents by Inventor Gareth Jenkins

Gareth Jenkins has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11873480
    Abstract: Embodiments provided herein relate to methods and compositions for preparing an immobilized library of barcoded DNA fragments of a target nucleic acid, identifying genomic variants, determining the contiguity information, phasing information, and methylation status of the target nucleic acid.
    Type: Grant
    Filed: October 16, 2015
    Date of Patent: January 16, 2024
    Assignee: ILLUMINA CAMBRIDGE LIMITED
    Inventors: Frank J. Steemers, Kevin L. Gunderson, Fan Zhang, Jason Richard Betley, Niall Anthony Gormley, Wouter Meuleman, Jacqueline Weir, Avgousta Ioannou, Gareth Jenkins, Rosamond Jackson, Natalie Morrell, Dmitry K. Pokholok, Steven J. Norberg, Molly He, Amirali Kia, Igor Goryshin, Rigo Pantoja
  • Publication number: 20230191346
    Abstract: A microfluidic system and method suitable for liquid mixing. The microfluidic system uses a pump (400) as the driving source, which draws at least two liquid samples that are to be mixed into the pump (400). Some air is drawn into the pump (400) as well. The system is also comprised of a mixing reservoir (203). The two liquids drawn into the pump (400) are pushed into the mixing reservoir (203). The air bubbles generated by the air have a stirring effect on the mixed liquid in the mixing reservoir (203). After the air bubbles burst, left at rest, and the air has risen to the top of the mixing reservoir (203), the mixed liquid is drawn back to the pump (400) and fed to the outlet (103) for subsequent detection steps. The addition of an antifoaming agent will prevent the accumulation of air bubbles during the mixing process.
    Type: Application
    Filed: April 3, 2019
    Publication date: June 22, 2023
    Applicant: BioFab Limited
    Inventors: Gareth Jenkins, Xin Yang
  • Publication number: 20220282242
    Abstract: Embodiments provided herein relate to methods and compositions for preparing an immobilized library of barcoded DNA fragments of a target nucleic acid, identifying genomic variants, determining the contiguity information, phasing information, and methylation status of the target nucleic acid.
    Type: Application
    Filed: April 12, 2022
    Publication date: September 8, 2022
    Inventors: Frank J. Steemers, Kevin L. Gunderson, Fan Zhang, Jason Richard Betley, Niall Anthony Gormley, Wouter Meuleman, Jacqueline Weir, Avgousta Ioannou, Gareth Jenkins, Rosamond Jackson, Natalie Morrell, Dmitry K. Pokholok, Steven J. Norberg, Molly He, Amirali Kia, Igor Goryshin, Rigo Pantoja
  • Patent number: 11027303
    Abstract: A system for dispensing fluid in response to a sensed property such as an ambient sound comprises a sensor for detecting one or more properties, a processing stage for determining if the one or more sensed properties is/are within a predetermined range and/or above and/or below a predetermined level and dispenser for dispensing a fluid into an area surrounding the system if the one or more sensed properties is/are determined by the processing stage to be within a predetermined range and/or above and/or below a predetermined level and/or value.
    Type: Grant
    Filed: June 12, 2017
    Date of Patent: June 8, 2021
    Assignee: SENSORY DESIGN & TECHNOLOGY LTD.
    Inventors: Jenny Tillotson, Gareth Jenkins
  • Patent number: 10783124
    Abstract: Data structures stored on a source database are migrated to a destination database in which the data are structured in a different format than that of the source database. Dictionaries are stored that are based on representations of the data structures stored on the source database that are formatted in other than the structural format used on the source database for the data structures. One of the data structures and a corresponding one of the dictionaries are transferred from the source database to a destination database. The transferred data structure is loaded onto the destination database in accordance with the transferred dictionary.
    Type: Grant
    Filed: December 6, 2017
    Date of Patent: September 22, 2020
    Assignee: International Business Machines Corporation
    Inventors: Pedro M. Barbas, Konrad Emanowicz, Gareth Jenkins, Enda McCallig, Lei Pan
  • Patent number: 10649965
    Abstract: Data structures stored on a source database are migrated to a destination database in which the data are structured in a different format than that of the source database. Dictionaries are stored that are based on representations of the data structures stored on the source database that are formatted in other than the structural format used on the source database for the data structures. One of the data structures and a corresponding one of the dictionaries are transferred from the source database to a destination database. The transferred data structure is loaded onto the destination database in accordance with the transferred dictionary.
    Type: Grant
    Filed: November 14, 2016
    Date of Patent: May 12, 2020
    Assignee: International Business Machines Corporation
    Inventors: Pedro M. Barbas, Konrad Emanowicz, Gareth Jenkins, Enda McCallig, Lei Pan
  • Patent number: 10351846
    Abstract: An apparatus and method for applying a chemistry to samples of interest are provided. The apparatus and method include a flexible tape mounted on an arrangement of guide rollers. Samples of interest (e.g., clusters of DNA templates) are bound to at least one surface of the flexible tape. The method and apparatus further comprise one or more read heads in relation to the flexible tape and a plurality of reservoirs along a path of the flexible tape. The reservoirs comprise liquids comprising chemical reagents for performing the chemistry on the samples of interest bound to the at least one surface of the flexible tape. The method and apparatus further comprise a drive system for driving at least one of the guide rollers to advance the flexible tape into and out of the reservoirs.
    Type: Grant
    Filed: September 11, 2015
    Date of Patent: July 16, 2019
    Assignee: ILLUMINA CAMBRIDGE LIMITED
    Inventors: Jonathan Mark Boutell, Gary Mark Skinner, Gareth Jenkins
  • Publication number: 20190048332
    Abstract: Embodiments provided herein relate to methods and compositions for preparing an immobilized library of barcoded DNA fragments of a target nucleic acid, identifying genomic variants, determining the contiguity information, phasing information, and methylation status of the target nucleic acid.
    Type: Application
    Filed: October 29, 2018
    Publication date: February 14, 2019
    Inventors: Frank J. Steemers, Kevin L. Gunderson, Fan Zhang, Jason Richard Betley, Niall Anthony Gormley, Wouter Meuleman, Jacqueline Weir, Avgousta Ioannou, Gareth Jenkins, Rosamond Jackson, Natalie Morrell, Dmitry K. Pokholok, Steven J. Norberg, Molly He, Amirali Kia, Igor Goryshin, Rigo Pantoja
  • Publication number: 20190040382
    Abstract: Embodiments provided herein relate to methods and compositions for preparing an immobilized library of barcoded DNA fragments of a target nucleic acid, identifying genomic variants, determining the contiguity information, phasing information, and methylation status of the target nucleic acid.
    Type: Application
    Filed: October 16, 2015
    Publication date: February 7, 2019
    Applicant: ILLUMINA CAMBRIDGE LIMITED
    Inventors: Frank J. Steemers, Kevin L. Gunderson, Fan Zhang, Jason Richard Betley, Niall Anthony Gormley, Wouter Meuleman, Jacqueline Weir, Avgousta Ioannou, Gareth Jenkins, Rosamond Jackson, Natalie Morrell, Dmitry K. Pokholok, Steven J. Norberg, Molly He, Amirali Kia, Igor Goryshin, Rigo Pantoja
  • Publication number: 20180137114
    Abstract: Data structures stored on a source database are migrated to a destination database in which the data are structured in a different format than that of the source database. Dictionaries are stored that are based on representations of the data structures stored on the source database that are formatted in other than the structural format used on the source database for the data structures. One of the data structures and a corresponding one of the dictionaries are transferred from the source database to a destination database. The transferred data structure is loaded onto the destination database in accordance with the transferred dictionary.
    Type: Application
    Filed: December 6, 2017
    Publication date: May 17, 2018
    Inventors: Pedro M. Barbas, Konrad Emanowicz, Gareth Jenkins, Enda McCallig, Lei Pan
  • Publication number: 20180137112
    Abstract: Data structures stored on a source database are migrated to a destination database in which the data are structured in a different format than that of the source database. Dictionaries are stored that are based on representations of the data structures stored on the source database that are formatted in other than the structural format used on the source database for the data structures. One of the data structures and a corresponding one of the dictionaries are transferred from the source database to a destination database. The transferred data structure is loaded onto the destination database in accordance with the transferred dictionary.
    Type: Application
    Filed: November 14, 2016
    Publication date: May 17, 2018
    Inventors: Pedro M. Barbas, Konrad Emanowicz, Gareth Jenkins, Enda McCallig, Lei Pan
  • Publication number: 20180093288
    Abstract: A system for dispensing fluid in response to a sensed property such as an ambient sound comprises a sensor (2) for detecting one or more properties, a processing stage for determining if the one or more sensed properties is/are within a predetermined range and/or above and/or below a predetermined level and dispenser (6) for dispensing a fluid into an area surrounding the system if the one or more sensed properties is/are determined by the processing stage to be within a predetermined range and/or above and/or below a predetermined level and/or value.
    Type: Application
    Filed: June 12, 2017
    Publication date: April 5, 2018
    Inventors: Jenny Tillotson, Gareth Jenkins
  • Patent number: 9773027
    Abstract: In an exemplary embodiment of this disclosure, a method for loading data from a backup image of a database includes selecting a subset statement defining a subset of the data in the database. Tables of the database are identified based on metadata of the database. A target database is written having the structure but not the data of the identified tables. One or more table statements are constructed, by a computer processor, defining a subset of each identified table based on the subset statement. Selected data is unloaded from a backup image into the target database using respective table statements as filters.
    Type: Grant
    Filed: September 11, 2015
    Date of Patent: September 26, 2017
    Assignee: INTERNATIONAL BUSINESS MACHINES CORPORATION
    Inventors: Sami Abed, Austin Clifford, Konrad Emanowicz, Gareth Jenkins
  • Publication number: 20160335609
    Abstract: A system and method for verifying ownership of a digital asset transferred over a network includes creating a first public digital tag for the digital asset upon performing a first transaction, the first digital tag including a unique identifier of the digital asset, a namespace associated with the digital asset, and a first current forward address for the transfer of the digital asset, permanently associating the first public digital tag with the digital asset, and transferring the digital asset with the associated first public digital tag in accordance with the first transaction. A second public digital tag is permanently associated with the digital asset upon a subsequent transfer of the digital asset to a second current forward address in accordance with a second transaction, the second digital tag including the unique identifier of the digital asset, the namespace associated with the digital asset, and a second current forward address for the subsequent transfer of the digital asset.
    Type: Application
    Filed: May 12, 2016
    Publication date: November 17, 2016
    Inventor: Gareth Jenkins
  • Patent number: 9471607
    Abstract: In an exemplary embodiment of this disclosure, a method for loading data from a backup image of a database includes selecting a subset statement defining a subset of the data in the database. Tables of the database are identified based on metadata of the database. A target database is written having the structure but not the data of the identified tables. One or more table statements are constructed, by a computer processor, defining a subset of each identified table based on the subset statement. Selected data is unloaded from a backup image into the target database using respective table statements as filters.
    Type: Grant
    Filed: August 14, 2013
    Date of Patent: October 18, 2016
    Assignee: INTERNATIONAL BUSINESS MACHINES CORPORATION
    Inventors: Sami Abed, Austin Clifford, Konrad Emanowicz, Gareth Jenkins
  • Publication number: 20160188418
    Abstract: In an exemplary embodiment of this disclosure, a method for loading data from a backup image of a database includes selecting a subset statement defining a subset of the data in the database. Tables of the database are identified based on metadata of the database. A target database is written having the structure but not the data of the identified tables. One or more table statements are constructed, by a computer processor, defining a subset of each identified table based on the subset statement. Selected data is unloaded from a backup image into the target database using respective table statements as filters.
    Type: Application
    Filed: September 11, 2015
    Publication date: June 30, 2016
    Inventors: Sami Abed, Austin Clifford, Konrad Emanowicz, Gareth Jenkins
  • Publication number: 20160076025
    Abstract: An apparatus and method for applying a chemistry to samples of interest are provided. The apparatus and method include a flexible tape mounted on an arrangement of guide rollers. Samples of interest (e.g., clusters of DNA templates) are bound to at least one surface of the flexible tape. The method and apparatus further comprise one or more read heads in relation to the flexible tape and a plurality of reservoirs along a path of the flexible tape. The reservoirs comprise liquids comprising chemical reagents for performing the chemistry on the samples of interest bound to the at least one surface of the flexible tape. The method and apparatus further comprise a drive system for driving at least one of the guide rollers to advance the flexible tape into and out of the reservoirs.
    Type: Application
    Filed: September 11, 2015
    Publication date: March 17, 2016
    Applicant: Illumina Cambridge Limited
    Inventors: Jonathan Mark Boutell, Gary Mark Skinner, Gareth Jenkins
  • Patent number: 9135315
    Abstract: Aspects include data masking in database operations including intercepting a database query and identifying masked data in the query. The masked data in the query is unmasked by substituting the masked data with equivalent real values. The unmasked query is sent to the database engine, and a result provided by the database engine in response to the unmasked query is intercepted. The values in the result that correspond to sensitive information are identified. The result is masked by substituting the values in the result corresponding to sensitive information with masked equivalents. The masked result is returned to a user.
    Type: Grant
    Filed: February 26, 2013
    Date of Patent: September 15, 2015
    Assignee: Internatonal Business Machines Corporation
    Inventors: Pedro Barbas, Austin Clifford, Gareth Jenkins, Brian McKeown
  • Publication number: 20140114924
    Abstract: In an exemplary embodiment of this disclosure, a method for loading data from a backup image of a database includes selecting a subset statement defining a subset of the data in the database. Tables of the database are identified based on metadata of the database. A target database is written having the structure but not the data of the identified tables. One or more table statements are constructed, by a computer processor, defining a subset of each identified table based on the subset statement. Selected data is unloaded from a backup image into the target database using respective table statements as filters.
    Type: Application
    Filed: August 14, 2013
    Publication date: April 24, 2014
    Applicant: International Business Machines Corporation
    Inventors: Sami Abed, Austin Clifford, Konrad Emanowicz, Gareth Jenkins
  • Publication number: 20130282697
    Abstract: Aspects include data masking in database operations including intercepting a database query and identifying masked data in the query. The masked data in the query is unmasked by substituting the masked data with equivalent real values. The unmasked query is sent to the database engine, and a result provided by the database engine in response to the unmasked query is intercepted. The values in the result that correspond to sensitive information are identified. The result is masked by substituting the values in the result corresponding to sensitive information with masked equivalents. The masked result is returned to a user.
    Type: Application
    Filed: February 26, 2013
    Publication date: October 24, 2013
    Applicant: INTERNATIONAL BUSINESS MACHINES CORPORATION
    Inventors: Pedro Barbas, Austin Clifford, Gareth Jenkins, Brian McKeown