Patents by Inventor Hajime Matsuzaki

Hajime Matsuzaki has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11959099
    Abstract: A method of altering cells comprising culturing them in a growth factor gradient, wherein said gradient is provided by a polyhedra delivery system (PODS) that releases the growth factor to set up the gradient.
    Type: Grant
    Filed: April 11, 2018
    Date of Patent: April 16, 2024
    Assignees: Cell Guidance Systems Limited, Yuka Matsuzakt
    Inventors: Yuka Matsuzaki, Hajime Mori, Christian Pernstich, Michael Howard Jones
  • Patent number: 11943929
    Abstract: A semiconductor device with a large storage capacity per unit area is provided. The semiconductor device includes a first insulator including a first opening, a first conductor that is over the first insulator and includes a second opening, a second insulator that is over the first insulator and includes a third opening, and an oxide penetrating the first opening, the second opening, and the third opening. The oxide includes a first region at least in the first opening, a second region at least in the second opening, and a third region at least in the third opening. The resistances of the first region and the third region are lower than the resistance of the second region.
    Type: Grant
    Filed: March 31, 2023
    Date of Patent: March 26, 2024
    Assignee: Semiconductor Energy Laboratory Co., Ltd.
    Inventors: Shunpei Yamazaki, Hajime Kimura, Takanori Matsuzaki, Kiyoshi Kato, Satoru Okamoto
  • Publication number: 20230352117
    Abstract: A method for reviewing sequencing data for identifying microorganisms in a sample is provided. A request to display an analysis of a result set obtained from sequencing nucleic acids from the sample is received. The result set includes sequencing statistics, nucleotide sequences mapped against microorganism reference sequences, and mapping statistics for the mapping of nucleotide sequences to each respective reference sequence. A first customizable diagnostic template is applied to the result set. The customizable diagnostic template specifies a subset of sequencing statistics, a subset of microorganisms, and a subset of mapping statistics. A customizable user interface is displayed comprising a. review' status, a.
    Type: Application
    Filed: February 23, 2022
    Publication date: November 2, 2023
    Inventors: Robert Schlaberg, Steven Flygare, Kate Broadbent, Qing Li, Hajime Matsuzaki, Wan Xie
  • Publication number: 20230132199
    Abstract: The present disclosure provides methods and systems for processing samples including nucleic acid molecules. The methods may comprise identifying polymorphisms in a plurality of sequencing libraries and using the polymorphisms to identify the plurality of sequencing libraries as being associated with the same sample.
    Type: Application
    Filed: July 11, 2019
    Publication date: April 27, 2023
    Inventors: Hajime MATSUZAKI, Guochun LIAO, Yuying MEI
  • Publication number: 20220177958
    Abstract: The present disclosure provides methods and systems for processing nucleic acid molecules. The methods may comprise performing one or more extension or amplification processes to provide libraries for subsequent analysis using nucleic acid sequencing. Logical partitioning and directionality considerations may facilitate efficient and cost-effective amplification of target nucleic acid sequences.
    Type: Application
    Filed: May 12, 2021
    Publication date: June 9, 2022
    Inventors: Hajime MATSUZAKI, Yuying MEI, Guochun LIAO
  • Publication number: 20220122695
    Abstract: The present disclosure provides methods and systems for providing and/or displaying information corresponding to a sample. The information may comprise the identity of one or more microorganisms within the sample and may be based on an analysis of sequencing reads corresponding to the sample.
    Type: Application
    Filed: August 27, 2019
    Publication date: April 21, 2022
    Inventors: Steven FLYGARE, Wan Rong XIE, Hajime MATSUZAKI, Brett HOUTZ, Robert SCHLABERG, Qing LI
  • Patent number: 10174368
    Abstract: The present invention provides methods and systems for sequencing long nucleic acid fragment. The present invention also provides a method of sequencing a target polynucleotide with fewer probes. Further, the present invention provides a method of sequencing a target polynucleotide with longer reads. Locus-specific, ligation-assisted sequencing/genotyping method and ligation-captured sequencing method are also provided in the present invention. The methods of the present invention allow low-cost, high-throughput and accurate sequencing of nucleic acids.
    Type: Grant
    Filed: June 23, 2017
    Date of Patent: January 8, 2019
    Assignee: Centrillion Technology Holdings Corporation
    Inventors: Wei Zhou, Rui Mei, Hajime Matsuzaki
  • Patent number: 10072287
    Abstract: The present invention provides methods for targeted sequencing of polynucleotide. In one aspect, the present invention provides a method of sequencing a target polynucleotide with fewer probes. In another aspect, the present invention provides a method of sequencing a target polynucleotide with longer reads. Locus-specific, ligation-assisted sequencing/genotyping method and ligation-captured sequencing method are also provided in the present invention. The methods of the present invention allow low-cost, high-throughput and accurate sequencing of nucleic acids.
    Type: Grant
    Filed: September 10, 2010
    Date of Patent: September 11, 2018
    Assignee: Centrillion Technology Holdings Corporation
    Inventors: Wei Zhou, Rui Mei, Hajime Matsuzaki
  • Publication number: 20180230513
    Abstract: The presently claimed invention provides for novel methods and kits for analyzing a collection of target sequences in a nucleic acid sample. A sample is amplified under conditions that enrich for a subset of fragments that includes a collection of target sequences. The invention further provides for analysis of the above sample by hybridization to an array, which may be specifically designed to interrogate the collection of target sequences for particular characteristics, such as, for example, the presence or absence of one or more polymorphisms.
    Type: Application
    Filed: November 10, 2017
    Publication date: August 16, 2018
    Inventors: Hajime Matsuzaki, Xing Su, Sean Walsh, Giulia Kennedy, Rui Mei
  • Publication number: 20180016642
    Abstract: Provided herein are methods, systems and kits for stratification of risk of disease occurrence of a sample obtained from a subject by combining two or more feature spaces to improve individualization of subject management.
    Type: Application
    Filed: September 1, 2017
    Publication date: January 18, 2018
    Inventors: Giulia C. KENNEDY, Moraima PAGAN, Chu-Fang LIN, Jing HUANG, P. Sean WALSH, Hajime MATSUZAKI, Kevin TRAVERS, Su Yeon KIM
  • Publication number: 20180010180
    Abstract: The present invention provides methods and systems for sequencing long nucleic acid fragment. The present invention also provides a method of sequencing a target polynucleotide with fewer probes. Further, the present invention provides a method of sequencing a target polynucleotide with longer reads. Locus-specific, ligation-assisted sequencing/genotyping method and ligation-captured sequencing method are also provided in the present invention. The methods of the present invention allow low-cost, high-throughput and accurate sequencing of nucleic acids.
    Type: Application
    Filed: June 23, 2017
    Publication date: January 11, 2018
    Inventors: Wei ZHOU, Rui MEI, Hajime MATSUZAKI
  • Patent number: 9845490
    Abstract: The presently claimed invention provides for novel methods and kits for analyzing a collection of target sequences in a nucleic acid sample. A sample is amplified under conditions that enrich for a subset of fragments that includes a collection of target sequences. The invention further provides for analysis of the above sample by hybridization to an array, which may be specifically designed to interrogate the collection of target sequences for particular characteristics, such as, for example, the presence or absence of one or more polymorphisms.
    Type: Grant
    Filed: December 3, 2013
    Date of Patent: December 19, 2017
    Assignee: Affymetrix, Inc.
    Inventors: Hajime Matsuzaki, Xing Su, Sean Walsh, Giulia Kennedy, Rui Mei
  • Publication number: 20150017632
    Abstract: The presently claimed invention provides for novel methods and kits for analyzing a collection of target sequences in a nucleic acid sample. A sample is amplified under conditions that enrich for a subset of fragments that includes a collection of target sequences. The invention further provides for analysis of the above sample by hybridization to an array, which may be specifically designed to interrogate the collection of target sequences for particular characteristics, such as, for example, the presence or absence of one or more polymorphisms.
    Type: Application
    Filed: December 3, 2013
    Publication date: January 15, 2015
    Applicant: Affymetrix, Inc.
    Inventors: Hajime Matsuzaki, Xing Su, Sean Walsh, Giulia Kennedy, Rui Mei
  • Patent number: 8679758
    Abstract: The presently claimed invention provides for novel methods and kits for analyzing a collection of target sequences in a nucleic acid sample. A sample is amplified under conditions that enrich for a subset of fragments that includes a collection of target sequences. The invention further provides for analysis of the above sample by hybridization to an array, which may be specifically designed to interrogate the collection of target sequences for particular characteristics, such as, for example, the presence or absence of one or more polymorphisms.
    Type: Grant
    Filed: August 6, 2012
    Date of Patent: March 25, 2014
    Assignee: Affymetrix, Inc.
    Inventors: Hajime Matsuzaki, Xing Su, Sean Walsh, Giulia Kennedy, Rui Mei
  • Publication number: 20130137583
    Abstract: The presently claimed invention provides for novel methods and kits for analyzing a collection of target sequences in a nucleic acid sample. A sample is amplified under conditions that enrich for a subset of fragments that includes a collection of target sequences. The invention further provides for analysis of the above sample by hybridization to an array, which may be specifically designed to interrogate the collection of target sequences for particular characteristics, such as, for example, the presence or absence of one or more polymorphisms.
    Type: Application
    Filed: August 6, 2012
    Publication date: May 30, 2013
    Applicant: Affymetrix, Inc.
    Inventors: Hajime Matsuzaki, Xing Su, Sean Walsh, Giulia Kennedy, Rui Mei
  • Publication number: 20130045872
    Abstract: The present invention provides methods for targeted sequencing of polynucleotide. In one aspect, the present invention provides a method of sequencing a target polynucleotide with fewer probes. In another aspect, the present invention provides a method of sequencing a target polynucleotide with longer reads. Locus-specific, ligation-assisted sequencing/genotyping method and ligation-captured sequencing method are also provided in the present invention. The methods of the present invention allow low-cost, high-throughput and accurate sequencing of nucleic acids.
    Type: Application
    Filed: September 10, 2010
    Publication date: February 21, 2013
    Inventors: Wei Zhou, Rui Mei, Hajime Matsuzaki
  • Publication number: 20120071328
    Abstract: The presently claimed invention provides for novel methods and kits for analyzing a collection of target sequences in a nucleic acid sample. A sample is amplified under conditions that enrich for a subset of fragments that includes a collection of target sequences. The invention further provides for analysis of the above sample by hybridization to an array, which may be specifically designed to interrogate the collection of target sequences for particular characteristics, such as, for example, the presence or absence of one or more polymorphisms.
    Type: Application
    Filed: August 24, 2011
    Publication date: March 22, 2012
    Applicant: Affymetrix, INC.
    Inventors: Hajime Matsuzaki, Xing Su, Sean Walsh, Giulia Kennedy, Rui Mei
  • Patent number: 8029999
    Abstract: The presently claimed invention provides for novel methods and kits for analyzing a collection of target sequences in a nucleic acid sample. A sample is amplified under conditions that enrich for a subset of fragments that includes a collection of target sequences. The invention further provides for analysis of the above sample by hybridization to an array, which may be specifically designed to interrogate the collection of target sequences for particular characteristics, such as, for example, the presence or absence of one or more polymorphisms.
    Type: Grant
    Filed: October 18, 2007
    Date of Patent: October 4, 2011
    Assignee: Affymetrix, Inc.
    Inventors: Hajime Matsuzaki, Xing Su, Sean Walsh, Giulia Kennedy, Rui Mei
  • Publication number: 20110160092
    Abstract: The invention relates to the selection of a collection of relevant single nucleotide polymorphisms across a genome to design a nucleic acid probe array. As such, the invention relates to diverse fields impacted by the nature of genetics, including biology, medicine, and medical diagnostics.
    Type: Application
    Filed: January 14, 2011
    Publication date: June 30, 2011
    Applicant: Affymetrix, INC.
    Inventors: Teresa A. Webster, Hajime Matsuzaki, Xiaojun Di, Earl A. Hubbell, Rui Mei, Simon Cawley, Gregory Marcus, Keith W. Jones
  • Patent number: 7881875
    Abstract: The invention relates to the selection of a collection of relevant single nucleotide polymorphisms across a genome to design a nucleic acid probe array. As such, the invention relates to diverse fields impacted by the nature of genetics, including biology, medicine, and medical diagnostics.
    Type: Grant
    Filed: July 13, 2006
    Date of Patent: February 1, 2011
    Assignee: Affymetrix, Inc.
    Inventors: Teresa A. Webster, Hajime Matsuzaki, Xiaojun Di, Earl A. Hubbell, Rui Mei, Simon Cawley, Gregory Marcus, Keith W. Jones