Abstract: A method includes defining a plurality of different windows of time in a recurrent artificial neural network, wherein each of the different windows has different durations, has different start times, or has both different durations and different start times, identifying occurrences of topological patterns of activity in the recurrent artificial neural network in the different windows of time, comparing the occurrences of the topological patterns of activity in the different windows, and classifying, based on a result of the comparison, a first decision that is represented by a first topological pattern of activity that occurs in a first of the windows as less robust than a second decision that is represented by a second topological pattern of activity that occurs in a second of the windows.

Abstract: In one aspect, a method includes generating a functional subgraph of a network from a structural graph of the network. The structural graph comprises a set of vertices and structural connections between the vertices. Generating the functional subgraph includes identifying a directed functional edge of the functional subgraph based on presence of structural connection and directional communication of information across the same structural connection.

Abstract: Methods, systems, and devices for encrypting and decrypting data. In one implementation, an encryption method includes inputting plaintext into a recurrent artificial neural network, identifying topological structures in patterns of activity in the recurrent artificial neural network, wherein the patterns of activity are responsive to the input of the plaintext, representing the identified topological structures in a binary sequence of length L and implementing a permutation of the set of all binary codewords of length L. The implemented permutation is a function from the set of binary codewords of length L to itself that is injective and surjective.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for characterizing activity in a recurrent artificial neural network. In one aspect, a method for identifying decision moments in a recurrent artificial neural network includes determining a complexity of patterns of activity in the recurrent artificial neural network, wherein the activity is responsive to input into the recurrent artificial neural network, determining a timing of activity having a complexity that is distinguishable from other activity that is responsive to the input, and identifying the decision moment based on the timing of the activity that has the distinguishable complexity.

Abstract: Methods, systems, and devices for homomorphic encryption. In one implementation, the methods include inputting first data into a recurrent artificial neural network, identifying patterns of activity in the recurrent artificial neural network that are responsive to the input of the secure data, storing second data representing whether the identified patterns of activity comports with topological patterns, and statistically analyzing the second data to draw conclusions about the first data.

Abstract: A method includes defining a plurality of different windows of time in a recurrent artificial neural network, wherein each of the different windows has different durations, has different start times, or has both different durations and different start times, identifying occurrences of topological patterns of activity in the recurrent artificial neural network in the different windows of time, comparing the occurrences of the topological patterns of activity in the different windows, and classifying, based on a result of the comparison, a first decision that is represented by a first topological pattern of activity that occurs in a first of the windows as less robust than a second decision that is represented by a second topological pattern of activity that occurs in a second of the windows.

Abstract: In one aspect, a method includes generating a functional subgraph of a network from a structural graph of the network. The structural graph comprises a set of vertices and structural connections between the vertices. Generating the functional subgraph includes identifying a directed functional edge of the functional subgraph based on presence of structural connection and directional communication of information across the same structural connection.

Abstract: Distance metrics and clustering in recurrent neural networks. For example, a method includes determining whether topological patterns of activity in a collection of topological patterns occur in a recurrent artificial neural network in response to input of first data into the recurrent artificial neural network, and determining a distance between the first data and either second data or a reference based on the topological patterns of activity that are determined to occur in response to the input of the first data.

Abstract: Methods, systems, and devices for encrypting and decrypting data. In one implementation, an encryption method includes inputting plaintext into a recurrent artificial neural network, identifying topological structures in patterns of activity in the recurrent artificial neural network, wherein the patterns of activity are responsive to the input of the plaintext, representing the identified topological structures in a binary sequence of length L and implementing a permutation of the set of all binary codewords of length L. The implemented permutation is a function from the set of binary codewords of length L to itself that is injective and surjective.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for constructing and operating a recurrent artificial neural network. In one aspect, a method is for reading the output of an artificial recurrent neural network that comprises a plurality of nodes and edges connecting the nodes.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for selecting a set of elements that form a cognitive process in a recurrent neural network. The method comprises identifying activity in the recurrent neural network that comports with relatively simple topological patterns, using the identified relatively simple topological patterns as a constraint to identify relatively more complex topological patterns of activity in the recurrent neural network, using the identified relatively more complex topological patterns as a constraint to identify relatively still more complex topological patterns of activity in the recurrent neural network, and outputting identifications of the topological patterns of activity that have occurred in the recurrent neural network.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for constructing and operating a recurrent artificial neural network. In one aspect, a method is for constructing connections between nodes of an artificial recurrent neural network that mimics a target brain tissue.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for constructing and operating a recurrent artificial neural network. In one aspect, a method is for constructing nodes of an artificial recurrent neural network that mimics a target brain tissue.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium for generating model neurons. In one aspect, a method includes receiving a plurality of descriptions of branches of dendrites of one or more neurons and generating a collection of model neurites. Each of the descriptions characterizes, for an individual branch, i) a distance from a cell body at which the individual branch first bifurcates and ii) a distance from the cell body at which the individual branch actually terminates. Generating the collection of model neurites includes repeatedly selecting a description of a branch from the plurality and probabilistically generating a topology of a model neurite based on the selected description. The probabilistic generation of the model neurite includes deciding whether to bifurcate, terminate, or continue the model neurites at different positions based on the selected description.

Abstract: The simplification of neural network models is described. For example, a method for simplifying a neural network model includes providing the neural network model to be simplified, defining a first temporal filter for the conveyance of input from a neuron to an other spatially-extended neuron along the arborized projection, defining a second temporal filter for the conveyance of input from yet another neuron to the spatially-extended neuron along the arborized projection, replacing, in the neural network model, the first, spatially-extended neuron with a first, spatially-constrained neuron and the arborized projection with a first connection extending between the first, spatially-constrained neuron and the second neuron, wherein the first connection filters input from the second neuron in accordance with the first temporal filter and a second connection extending between the first spatially-constrained neuron and the third neuron.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for organizing trained and untrained neural networks. In one aspect, a neural network device includes a collection of node assemblies interconnected by between-assembly links, each node assembly itself comprising a network of nodes interconnected by a plurality of within-assembly links, wherein each of the between-assembly links and the within-assembly links have an associated weight, each weight embodying a strength of connection between the nodes joined by the associated link, the nodes within each assembly being more likely to be connected to other nodes within that assembly than to be connected to nodes within others of the node assemblies.

Abstract: The simplification of neural network models is described. For example, a method for simplifying a neural network model includes providing the neural network model to be simplified, defining a first temporal filter for the conveyance of input from a neuron to an other spatially-extended neuron along the arborized projection, defining a second temporal filter for the conveyance of input from yet another neuron to the spatially-extended neuron along the arborized projection, replacing, in the neural network model, the first, spatially-extended neuron with a first, spatially-constrained neuron and the arborized projection with a first connection extending between the first, spatially-constrained neuron and the second neuron, wherein the first connection filters input from the second neuron in accordance with the first temporal filter and a second connection extending between the first spatially-constrained neuron and the third neuron.

Abstract: Compositions for treatment or prevention of autism disorders are provided, and the compositions contain a therapeutically effective amount of a compound selected from the group consisting of Menthol, Linalool, Icilin and combinations thereof. Methods for treatment or prevention of autism disorders are also provided, and the methods include administering such compositions.

Abstract: Methods, systems, and apparatus, including computer programs encoded on a computer storage medium, for organizing trained and untrained neural networks. In one aspect, a neural network device includes a collection of node assemblies interconnected by between-assembly links, each node assembly itself comprising a network of nodes interconnected by a plurality of within-assembly links, wherein each of the between-assembly links and the within-assembly links have an associated weight, each weight embodying a strength of connection between the nodes joined by the associated link, the nodes within each assembly being more likely to be connected to other nodes within that assembly than to be connected to nodes within others of the node assemblies.

Abstract: Distance metrics and clustering in recurrent neural networks. For example, a method includes determining whether topological patterns of activity in a collection of topological patterns occur in a recurrent artificial neural network in response to input of first data into the recurrent artificial neural network, and determining a distance between the first data and either second data or a reference based on the topological patterns of activity that are determined to occur in response to the input of the first data.