Patents by Inventor Jacques Colinge

Jacques Colinge has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 7655628
    Abstract: The invention relates to the use of SARP-1 for the preparation of a medicament for the treatment and/or prevention of scleroderma, in particular of systemic sclerosis.
    Type: Grant
    Filed: December 20, 2007
    Date of Patent: February 2, 2010
    Assignee: Merck Serono SA
    Inventors: Christine Plater-Zyberk, Christine Power, Jacques Colinge
  • Patent number: 7409296
    Abstract: The present invention relates to a system and method for scoring peptide matches. Embodiments of the present invention improves identification of peptides and proteins by introducing an appropriate signal detection based scoring system and what is believed to be the new concept of an extended match. To score a match between a first peptide and a second peptide, a stochastic model may be generated based on one or more match characteristics associated with the first peptide, the second peptide and their fragments. A first probability that the first peptide matches the second peptide, and second probability that the first peptide does not match the second peptide, may be calculated based on the stochastic model. And a match between the first peptide and the second peptide may be scored based at least in part on a ratio between the first probability and the second probability.
    Type: Grant
    Filed: July 23, 2003
    Date of Patent: August 5, 2008
    Assignee: Geneva Bioinformatics (Genebio), S.A.
    Inventors: Jacques Colinge, Alexandre Masselot
  • Publication number: 20080107627
    Abstract: The invention relates to the use of SARP-1 for the preparation of a medicament for the treatment and/or prevention of scleroderma, in particular of systemic sclerosis.
    Type: Application
    Filed: December 20, 2007
    Publication date: May 8, 2008
    Applicant: LABORATORIES SERONO SA
    Inventors: Christine PLATER-ZYBERK, Christine Power, Jacques Colinge
  • Patent number: 7341995
    Abstract: The invention relates to the use of SARP-1 for the preparation of a medicament for the treatment and/or prevention of scleroderma, in particular of systemic sclerosis.
    Type: Grant
    Filed: November 30, 2001
    Date of Patent: March 11, 2008
    Assignee: Laboratoires Serono SA
    Inventors: Christine Plater-Zyberk, Christine Power, Jacques Colinge
  • Patent number: 7101665
    Abstract: A method for identification of gene transcripts comprises the steps of: generating a set of raw sequences by sequencing of biological material; isolating ditags from the set of raw sequences; isolating tags from the ditags; determining abundance of the tags; and identifying the tags, the method providing a step of reducing the amount of sequencing errors by using a statistical model for sequencing errors.
    Type: Grant
    Filed: December 27, 2000
    Date of Patent: September 5, 2006
    Assignee: Applied Research Systems ARS Holdings N.V.
    Inventors: Jacques Colinge, Georg Feger
  • Patent number: 6996474
    Abstract: The invention relate to an automated method for identifying related biomolecular sequences having defined features of interest from databases, the databases comprising at least a first and a second set of sequences, each set being derived from a different type of organism, comprising the steps of: a) establishing from the first set of sequences a non-redundant list of query sequences having the defined features of interest (first family members), using a database search program; b) performing sequence alignments with the first family members in a second set of sequences derived from a second type of organism, using a database search program and a preset similarity threshold, giving a list of second family members: c) establishing a two dimensional matrix displaying the first and second family members and their respective similarity values resulting from step (b), optionally displaying only those second family members having similarity values exceeding a preset threshold value; d) selecting from the matrix tho
    Type: Grant
    Filed: November 16, 2000
    Date of Patent: February 7, 2006
    Assignee: Applied Research Systems ARS Holding N.V.
    Inventors: Jacques Colinge, Rob Hooft Van Huijsduijnen
  • Publication number: 20050113291
    Abstract: The invention relates to the use of SARP-1 for the preparation of a medicament for the treatment and/or prevention of scleroderma, in particular of systemic sclerosis.
    Type: Application
    Filed: November 30, 2001
    Publication date: May 26, 2005
    Inventors: Christine Plater-Zyberk, Christine Power, Jacques Colinge
  • Publication number: 20050042682
    Abstract: The present disclosure relates to a system and method for scoring peptide mass fingerprinting.
    Type: Application
    Filed: July 13, 2004
    Publication date: February 24, 2005
    Applicant: GENEVA BIOINFORMATICS S.A.
    Inventors: Jacques Colinge, Jerome Magnin
  • Publication number: 20040143402
    Abstract: The present invention relates to a system and method for scoring peptide matches. Embodiments of the present invention improves identification of peptides and proteins by introducing an appropriate signal detection based scoring system and what is believed to be the new concept of an extended match. To score a match between a first peptide and a second peptide, a stochastic model may be generated based on one or more match characteristics associated with the first peptide, the second peptide and their fragments. A first probability that the first peptide matches the second peptide, and second probability that the first peptide does not match the second peptide, may be calculated based on the stochastic model. And a match between the first peptide and the second peptide may be scored based at least in part on a ratio between the first probability and the second probability.
    Type: Application
    Filed: July 23, 2003
    Publication date: July 22, 2004
    Applicant: GENEVA BIOINFORMATICS S.A.
    Inventors: Jacques Colinge, Alexandre Masselot
  • Publication number: 20040083060
    Abstract: The invention provides a method of operating a computer system, and a corresponding computer system, for performing a discrete substructural analysis. First, a database of molecular structures is accessed. The database is searchable by molecular structure information and biological and/or chemical properties. In said database, a set of molecules is identified that have a given biological and/or chemical property. Fragments of the molecules in said subset are then determined, and a score value is calculated for each fragment, indicating the contribution of the respective fragment to said given biological and/or chemical property. Finally, a reiteration process is performed by analyzing the determined fragments and calculated scores values, whereby first at least one fragment is selected that has a score value indicating high contribution to said biological and/or chemical property, and then the steps of accessing, identifying, determining and calculating are repeated.
    Type: Application
    Filed: October 27, 2003
    Publication date: April 29, 2004
    Inventors: Dennis Church, Jacques Colinge
  • Publication number: 20030138794
    Abstract: A method for identification of gene transcripts comprises the steps of: generating a set of raw sequences by sequencing of biological material; isolating ditags from the set of raw sequences; isolating tags from the ditags; determining abundance of the tags; and identifying the tags, the method providing a step of reducing the amount of sequencing errors by using a statistical model for sequencing errors.
    Type: Application
    Filed: October 28, 2002
    Publication date: July 24, 2003
    Inventors: Jacques Colinge, Georg Feger