Patents by Inventor James Diggans

James Diggans has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 12534763
    Abstract: The present invention provides methods for sequencing and analysis of nucleic acids and determining that a subject is positive for a non-usual interstitial pneumonia subtype.
    Type: Grant
    Filed: March 9, 2023
    Date of Patent: January 27, 2026
    Assignee: Veracyte, Inc.
    Inventors: Giulia C. Kennedy, James Diggans, Jing Huang, Yoonha Choi, Su Yeon Kim, Daniel Pankratz, Moraima Pagan
  • Publication number: 20260024623
    Abstract: Described herein are systems for data storage, including components for receiving, encoding, synthesizing, storing, reading, sequencing, and decoding digital information stored in polynucleotides and libraries of polynucleotides. Further described herein are assemblies for storing information, systems comprising the assemblies, and methods of using the assemblies.
    Type: Application
    Filed: September 25, 2025
    Publication date: January 22, 2026
    Inventors: Roger RUDOFF, Dominique TOPPANI, James DIGGANS, Mark WATSON, William BANYAI
  • Publication number: 20250305051
    Abstract: The present invention provides methods for sequencing and analysis of nucleic acids and determining that a subject is positive for a non-usual interstitial pneumonia subtype.
    Type: Application
    Filed: April 30, 2025
    Publication date: October 2, 2025
    Inventors: Giulia C. Kennedy, James Diggans, Jing Huang, Yoonha Choi, Su Yeon Kim, Daniel Pankratz, Moraima Pagan
  • Publication number: 20240110242
    Abstract: The present invention provides methods for sequencing and analysis of nucleic acids and determining that a subject is positive for a non-usual interstitial pneumonia subtype.
    Type: Application
    Filed: March 9, 2023
    Publication date: April 4, 2024
    Inventors: Giulia C. Kennedy, James Diggans, Jing Huang, Yoonha Choi, Su Yeon Kim, Daniel Pankratz, Moraima Pagan
  • Patent number: 11639527
    Abstract: The present invention provides methods for sequencing and analysis of nucleic acids and determining that a subject is positive for a non-usual interstitial pneumonia subtype.
    Type: Grant
    Filed: March 30, 2021
    Date of Patent: May 2, 2023
    Assignee: Veracyte, Inc.
    Inventors: Giulia C. Kennedy, James Diggans, Jing Huang, Yoonha Choi, Su Yeon Kim, Daniel Pankratz, Moraima Pagan
  • Publication number: 20210332431
    Abstract: The present disclosure provides methods for sequencing and analysis of nucleic acids.
    Type: Application
    Filed: March 30, 2021
    Publication date: October 28, 2021
    Inventors: Jonathan I. WILDE, Sharlene VELICHKO, Catalin BARBACIORU, James DIGGANS, Giulia C. KENNEDY
  • Publication number: 20210324464
    Abstract: The present invention provides methods for sequencing and analysis of nucleic acids.
    Type: Application
    Filed: March 30, 2021
    Publication date: October 21, 2021
    Inventors: Giulia C. KENNEDY, James DIGGANS, Jing HUANG, Yoonha CHOI, Su Yeon KIM, Daniel PANKRATZ, Moraima PAGAN
  • Publication number: 20210079471
    Abstract: The present invention provides systems, methods, and classifiers for differentiating between samples as usual interstitial pneumonia (UTP) or non-UIP.
    Type: Application
    Filed: April 3, 2020
    Publication date: March 18, 2021
    Inventors: Giulia C. KENNEDY, James DIGGANS, Jing HUANG, Yoonha CHOI, Su Yeon KIM, Daniel PANKRATZ, Moraima PAGAN
  • Publication number: 20210040559
    Abstract: The present disclosure provides methods for diagnosis of interstitial lung diseases (ILDs). The present disclosure provides methods for differential diagnosis of idiopathic pulmonary fibrosis from other ILDs. Compositions and kits useful in carrying out a subject method are also provided.
    Type: Application
    Filed: April 17, 2020
    Publication date: February 11, 2021
    Inventors: Jonathan I. WILDE, Sharlene VELICHKO, Catalin BARBACIORU, James DIGGANS, Giulia C. KENNEDY
  • Publication number: 20200299684
    Abstract: The present disclosure describes software tools for predicting the feasibility of synthesizing and assembling polynucleotides. Polynucleotide scoring tools describe herein provide automated methods for predicting efficient strategies and reaction conditions for synthesizing and assembling polynucleotides.
    Type: Application
    Filed: October 26, 2018
    Publication date: September 24, 2020
    Inventors: Esteban TORO, James DIGGANS, Siyuan CHEN, Anthony COX, Arthur VIGIL, Kieran HERVOLD
  • Publication number: 20170357752
    Abstract: The present disclosure describes software tools for effective biosecurity based on community knowledge and participation. Annotation tools described herein provide assistance to the synthetic biology community to track emerging science on the link between individual proteins and negative outcomes. Screening tools described herein enables the community to broaden both interest and effective practice of biosecurity so that practitioners and biological sequence or construct providers are empowered to evaluate the safety of order requests rather than waiting until synthesis or even expression. In addition, screening tools described herein provide for screening of polynucleotides across the same or multiple orders for sequences associated with harmful biological sequences from a reference database.
    Type: Application
    Filed: June 9, 2017
    Publication date: December 14, 2017
    Inventor: James DIGGANS
  • Publication number: 20170335396
    Abstract: The present invention provides systems, methods, and classifiers for differentiating between samples as usual interstitial pneumonia (UIP) or non-UIP.
    Type: Application
    Filed: November 5, 2015
    Publication date: November 23, 2017
    Inventors: Giulia C. KENNEDY, James DIGGANS, Jing HUANG, Yoonha CHOI, Su Yeon KIM, Daniel PANKRATZ, Moraima PAGAN
  • Publication number: 20170247759
    Abstract: The present disclosure provides methods for diagnosis of interstitial lung diseases (ILDs). The present disclosure provides methods for differential diagnosis of idiopathic pulmonary fibrosis from other ILDs. Compositions and kits useful in carrying out a subject method are also provided.
    Type: Application
    Filed: September 9, 2016
    Publication date: August 31, 2017
    Inventors: Jonathan I. WILDE, Sharlene VELICHKO, Catalin BARBACIORU, James DIGGANS, Giulia KENNEDY
  • Publication number: 20140378425
    Abstract: The present disclosure provides methods for diagnosis of interstitial lung diseases (ILDs). The present disclosure provides methods for differential diagnosis of idiopathic pulmonary fibrosis from other ILDs. Compositions and kits useful in carrying out a subject method are also provided.
    Type: Application
    Filed: March 14, 2014
    Publication date: December 25, 2014
    Applicant: Veracyte, Inc.
    Inventors: Jonathan I. Wilde, Sharlene Velichko, Catalin Barbacioru, James Diggans, Giulia Kennedy
  • Publication number: 20070015148
    Abstract: The present invention results from the examination of tissue from breast carcinomas to identify genes differentially expressed between tumor biopsies and normal tissue. The invention includes diagnostic and screening methods using these genes as well as solid supports comprising oligonucleotide arrays that are complementary to or hybridize to the differentially expressed genes.
    Type: Application
    Filed: January 25, 2002
    Publication date: January 18, 2007
    Inventors: Michael Orr, MIchelle Nation, James Diggans, Wen Zeng
  • Publication number: 20060240418
    Abstract: The present invention is based on the identification of novel canine nucleic acid sequences and the construction of canine microarrays containing a significant portion of the canine genome. The microarrays specifically hybridize to canine nucleic acid samples and may be used in drug screening and toxicity assays.
    Type: Application
    Filed: May 5, 2003
    Publication date: October 26, 2006
    Inventors: James Diggans, Mark Porter, Tao Wei