Patents by Inventor James J. Cali

James J. Cali has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240059961
    Abstract: Provided herein are polysiloxane matrices and biocompatible films thereof for the detection of oxygen. In particular, oxygen-sensitive fluorophores embedded within polysiloxane matrices are utilized for detection of oxygen consumption rate in living cells.
    Type: Application
    Filed: August 10, 2023
    Publication date: February 22, 2024
    Inventors: Ian Marozas, Zhiyang Zeng, Wenhui Zhou, James J. Cali, Mike Valley, Jolanta Vldugiriene
  • Patent number: 11857638
    Abstract: Conjugates comprise a drug or probe, a cell binding agent, and a quinone-containing linker. The quinone-containing linker may be reduced intracellularly to trigger release of the drug or probe. These conjugates may selectively deliver a drug or probe to a site of action of interest for local release of the active drug or probe.
    Type: Grant
    Filed: July 26, 2019
    Date of Patent: January 2, 2024
    Assignee: PROMEGA CORPORATION
    Inventors: Wenhui Zhou, Hui Wang, James J. Cali, Sarah Duellman, Jolanta Vidugiriene, Natasha Karassina
  • Publication number: 20230366045
    Abstract: Provided herein multifunctional compounds that bind and modify nucleic acids, forming crosslinks between the nucleic acid strands. In particular embodiments, the multifunctional nucleic-acid binding/modifying compounds are selective for nucleic acids of non-viable cells and viruses (i.e., they are excluded from or degraded within viable cells and viruses), and therefore find use in methods for detecting or discriminating viable and non-viable cells/viruses and nucleic acids therefrom.
    Type: Application
    Filed: March 1, 2023
    Publication date: November 16, 2023
    Inventors: Subhanjan Mondal, Nathan Feirer, Min Zhou, Michael Scurria, Wenhui Zhou, Said Goueli, James J. Cali
  • Publication number: 20230324390
    Abstract: The present disclosure relates to devices, methods, and systems or kits for detecting ATP in a sample. Particularly, the present disclosure relates to methods for removing ATP contamination from a sample and detecting intracellular ATP in the sample (e.g., as a proxy for detecting live cells in the sample).
    Type: Application
    Filed: April 6, 2023
    Publication date: October 12, 2023
    Inventors: Subhanjan Mondal, Dongping Ma, Kevin Hsiao, Said Goueli, James J. Cali
  • Publication number: 20220064710
    Abstract: The present disclosure includes compounds, compositions, and methods for nucleic acid amplification reactions. In particular, the present disclosure provides compounds, compositions, and methods for viability PCR (vPCR) applications, in which the compounds that selectively bind to nucleic acids from non-viable cells.
    Type: Application
    Filed: September 1, 2021
    Publication date: March 3, 2022
    Inventors: Ce SHI, Nathan FEIRER, Michael SCURRIA, Subhanjan MONDAL, Said GOUELI, Thomas KIRKLAND, James J. CALI, Poncho MEISENHEIMER
  • Patent number: 11214822
    Abstract: Methods, kits and compositions containing a mixture of D-luciferin and L-luciferin for light generation with luciferase are disclosed that have improved stability when stored over time. The mixture of D-luciferin and L-luciferin can be used to detect the presence or amount of ATP or of luciferase in a sample.
    Type: Grant
    Filed: November 1, 2019
    Date of Patent: January 4, 2022
    Assignee: PROMEGA CORPORATION
    Inventors: Michael P. Valley, James J. Cali, Brock Binkowski, Christopher Todd Eggers, Keith V. Wood
  • Patent number: 11066692
    Abstract: Provided herein are methods for the real-time monitoring of an intracellular event or response. In particular, the methods provided herein monitor the conversion of a pro-substrate to a substrate for a protein sensor as a result of an intracellular event or response.
    Type: Grant
    Filed: September 21, 2018
    Date of Patent: July 20, 2021
    Assignee: Promega Corporation
    Inventors: James J. Cali, Sarah Duellman, Jolanta Vidugiriene, Wenhui Zhou
  • Publication number: 20210190789
    Abstract: Provided herein are materials and methods for performing bioluminescent assays using a bifunctional probe. In particular, the present disclosure provides compositions and methods for detecting and/or quantifying a biomolecule and/or assaying a cellular process associated with the biomolecule using a bifunctional probe capable of binding the biomolecule and generating a bioluminescent and/or fluorescent signal.
    Type: Application
    Filed: December 9, 2020
    Publication date: June 24, 2021
    Inventors: Jolanta Vidugiriene, Peter Hofsteen, James J. Cali, Sarah Duellman, Hui Wang, Natasha Karassina, Wenhui Zhou
  • Patent number: 10745365
    Abstract: A method to detect the presence or amount of at least one molecule in a sample which employs a derivative of luciferin or a derivative of a fluorophore is provided. Compounds and compositions for carrying out the methods of the invention are also provided.
    Type: Grant
    Filed: August 22, 2018
    Date of Patent: August 18, 2020
    Assignee: Promega Corporation
    Inventors: James J. Cali, William Daily, Erika Hawkins, Dieter Klaubert, Jianquan Liu, Poncho Meisenheimer, Michael Scurria, John W. Shultz, James Unch, Michael P. Valley, Keith V. Wood, Wenhui Zhou
  • Publication number: 20200063186
    Abstract: Methods, kits and compositions containing a mixture of D-luciferin and L-luciferin for light generation with luciferase are disclosed that have improved stability when stored over time. The mixture of D-luciferin and L-luciferin can be used to detect the presence or amount of ATP or of luciferase in a sample.
    Type: Application
    Filed: November 1, 2019
    Publication date: February 27, 2020
    Inventors: Michael P. Valley, James J. Cali, Brock Binkowski, Christopher Todd Eggers, Keith V. Wood
  • Publication number: 20200030456
    Abstract: Conjugates comprise a drug or probe, a cell binding agent, and a quinone-containing linker. The quinone-containing linker may be reduced intracellularly to trigger release of the drug or probe. These conjugates may selectively deliver a drug or probe to a site of action of interest for local release of the active drug or probe.
    Type: Application
    Filed: July 26, 2019
    Publication date: January 30, 2020
    Inventors: Wenhui Zhou, Hui Wang, James J. Cali, Sarah Duellman, Jolanta Vidugiriene, Natasha Karassina
  • Patent number: 10501774
    Abstract: Methods, kits and compositions containing a mixture of D-luciferin and L-luciferin for light generation with luciferase are disclosed that have improved stability when stored over time. The mixture of D-luciferin and L-luciferin can be used to detect the presence or amount of ATP or of luciferase in a sample.
    Type: Grant
    Filed: July 20, 2016
    Date of Patent: December 10, 2019
    Assignee: PROMEGA CORPORATION
    Inventors: Michael P. Valley, James J. Cali, Brock Binkowski, Christopher Todd Eggers, Keith V. Wood
  • Patent number: 10408819
    Abstract: The invention provides compounds, compositions, methods, substrates, and kits useful for analyzing the metabolic activity in cells, tissue, and animals and for screening test compounds for their effect on cytochrome P450 activity. In particular, a one-step and two-step methods using luminogenic molecules, e.g. luciferins or coelenterazines, that are cytochrome P450 substrates and that are also bioluminescent enzyme, e.g., luciferase, pro-substrates are provided. The present method further provides a method for stabilizing and prolonging the luminescent signal in a luciferase-based assay using luciferase stabilizing agents such as reversible lucifetrase inhibitors.
    Type: Grant
    Filed: January 18, 2017
    Date of Patent: September 10, 2019
    Assignee: PROMEGA CORPORATION
    Inventors: James J. Cali, Dieter Klaubert, William Daily, Samuel Kin Sang Ho, Susan Frackman, Erika Hawkins, Keith V. Wood
  • Publication number: 20190031629
    Abstract: A method to detect the presence or amount of at least one molecule in a sample which employs a derivative of luciferin or a derivative of a fluorophore is provided. Compounds and compositions for carrying out the methods of the invention are also provided.
    Type: Application
    Filed: August 22, 2018
    Publication date: January 31, 2019
    Inventors: James J. Cali, William Daily, Erika Hawkins, Dieter Klaubert, Jianquan Liu, Poncho Meisenheimer, Michael Scurria, John W. Shultz, James Unch, Michael P. Valley, Keith V. Wood, Wenhui Zhou
  • Publication number: 20190010537
    Abstract: Provided herein are methods for the real-time monitoring of an intracellular event or response. In particular, the methods provided herein monitor the conversion of a pro-substrate to a substrate for a protein sensor as a result of an intracellular event or response.
    Type: Application
    Filed: September 21, 2018
    Publication date: January 10, 2019
    Inventors: James J. Cali, Sarah Duellman, Jolanta Vidugiriene, Wenhui Zhou
  • Patent number: 10077244
    Abstract: A method to detect the presence of amount of at least one molecule in a sample which employs a derivative of luciferin or a derivative of a fluorophore is provided. Compounds and compositions for carrying out the methods of the invention are also provided.
    Type: Grant
    Filed: November 25, 2014
    Date of Patent: September 18, 2018
    Assignee: PROMEGA CORPORATION
    Inventors: James J. Cali, William Daily, Erika Hawkins, Dieter Klaubert, Jianquan Liu, Poncho Meisenheimer, Michael Scurria, John W. Shultz, James Unch, Michael P. Valley, Keith V. Wood, Wenhui Zhou
  • Patent number: 9951372
    Abstract: The present invention provides compounds and methods for assaying redox state of metabolically active cells and methods for assaying enzyme activity and/or metabolite level by coupling to redox defining co-factor NAD(P)/NAD(P)H measurement.
    Type: Grant
    Filed: September 20, 2013
    Date of Patent: April 24, 2018
    Assignee: PROMEGA CORPORATION
    Inventors: Wenhui Zhou, Jolanta Vidugiriene, Helene A. Benink, James J. Cali, Sarah Duellman, Dieter Klaubert, Donna Leippe, Martha O'Brien, John Shultz, Mary Sobol
  • Patent number: 9790537
    Abstract: Provided are labeling reagents and methods of using the reagents for cell uptake measurements. The labeling reagents can be quinone-masked probes including fluorophores and/or luminophores.
    Type: Grant
    Filed: January 29, 2015
    Date of Patent: October 17, 2017
    Assignee: Promega Corporation
    Inventors: Wenhui Zhou, Poncho Meisenheimer, Sarah Duellman, Dongping Ma, James J. Cali, Dana Mustafa
  • Publication number: 20170191985
    Abstract: The invention provides compounds, compositions, methods, substrates, and kits useful for analyzing the metabolic activity in cells, tissue, and animals and for screening test compounds for their effect on cytochrome P450 activity. In particular, a one-step and two-step methods using luminogenic molecules, e.g. luciferins or coelenterazines, that are cytochrome P450 substrates and that are also bioluminescent enzyme, e.g., luciferase, pro-substrates are provided. The present method further provides a method for stabilizing and prolonging the luminescent signal in a luciferase-based assay using luciferase stabilizing agents such as reversible lucifetrase inhibitors.
    Type: Application
    Filed: January 18, 2017
    Publication date: July 6, 2017
    Inventors: James J. Cali, Dieter Klaubert, William Daily, Samuel Kin Sang Ho, Susan Frackman, Erika Hawkins, Keith V. Wood
  • Patent number: 9631225
    Abstract: A method and kit are provided for enhancing the tolerance of an assay reagent to compounds in an assay sample, the assay reagent including a luciferase enzyme. The method includes contacting the luciferase with a tolerance enhancement agent in an amount sufficient to substantially protect luciferase enzyme activity from interference of the compound and minimize interference by at least about 10% relative to an assay not having tolerance enhancement agent.
    Type: Grant
    Filed: October 14, 2014
    Date of Patent: April 25, 2017
    Assignee: PROMEGA CORPORATION
    Inventors: Erika Hawkins, James J. Cali, Samuel Kin Sang Ho, Martha A. O'Brien, Richard Somberg, Robert F. Bulleit, Keith V. Wood