Patents by Inventor James L. Winkler

James L. Winkler has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20100298165
    Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.
    Type: Application
    Filed: July 23, 2010
    Publication date: November 25, 2010
    Applicant: Affymetrix, INC.
    Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
  • Patent number: 7736906
    Abstract: A method and device for forming large arrays of polymers on a substrate (401). According to a preferred aspect of the invention, the substrate is contacted by a channel block (407) having channels (409) therein. Selected reagents are delivered through the channels, the substrate is rotated by a rotating stage (403), and the process is repeated to form arrays of polymers on the substrate. The method may be combined with light-directed methodologies.
    Type: Grant
    Filed: June 17, 2002
    Date of Patent: June 15, 2010
    Assignee: Affymetrix, Inc.
    Inventors: James L. Winkler, Stephen P. A. Fodor, Christopher J. Buchko, Debra A. Ross, Lois Aldwin, Douglas N. Modlin
  • Patent number: 7691330
    Abstract: A method and device for forming large arrays of polymers on a substrate (401). According to a preferred aspect of the invention, the substrate is contacted by a channel block (407) having channels (409) therein. Selected reagents are delivered through the channels, the substrate is rotated by a rotating stage (403), and the process is repeated to form arrays of polymers on the substrate. The method may be combined with light-directed methodolgies.
    Type: Grant
    Filed: May 26, 2000
    Date of Patent: April 6, 2010
    Assignee: Affymetrix, Inc.
    Inventors: James L. Winkler, Stephen P. A. Fodor, Christopher J. Buchko, Debra A. Ross, Lois Aldwin, Douglas N. Modlin
  • Publication number: 20090143249
    Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.
    Type: Application
    Filed: November 5, 2008
    Publication date: June 4, 2009
    Applicant: Affymetrix, INC.
    Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
  • Patent number: 7364895
    Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.
    Type: Grant
    Filed: August 11, 2003
    Date of Patent: April 29, 2008
    Assignee: Affymetrix, Inc.
    Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
  • Patent number: 7336812
    Abstract: The present invention provides an improved integrated system for biological marker identification. The system uses Microvolume Laser Scanning Microscopy (MLSC) in order to measure patterns of expression of biological markers in biological fluids. The system includes improved instrumentation for performing MLSC, and also includes improved particle detection and analysis methods. The system further comprises an informatics architecture for the analysis of data obtained from the MLSC in tandem with other medical information.
    Type: Grant
    Filed: February 3, 2004
    Date of Patent: February 26, 2008
    Assignee: PPD Biomarker Discovery Sciences, LLC
    Inventors: Louis J Dietz, Ian Walton, Chih-Hua Chung, Scott Norton, James L Winkler, Aaron B Kantor, Byron Lee, Shalom Tsur
  • Patent number: 7125161
    Abstract: The invention provides exemplary devices, systems and methods for mixing of fluids, such as biological fluids. One exemplary device comprises is particularly adapted for holding at least one cartridge having a chamber containing a biological fluid, with the chamber having a generally planar face. The device comprises a rotatable body having a rotational axis. The rotatable body includes at least one mounting element which is adapted to mount the rotatable body such that the face of the chamber is generally perpendicular to the rotational axis.
    Type: Grant
    Filed: December 3, 2003
    Date of Patent: October 24, 2006
    Assignee: Affymetrix, Inc.
    Inventors: James L. Winkler, Mark Chee, David Lockhart
  • Patent number: 7045049
    Abstract: Synthetic methods for the manufacture of segmented nanoparticles are described.
    Type: Grant
    Filed: October 2, 2000
    Date of Patent: May 16, 2006
    Assignee: Nanoplex Technologies, Inc.
    Inventors: Michael J. Natan, Thomas E. Mallouk, Benjamin R. Martin, Brian D. Reiss, Louis J. Dietz, James L. Winkler
  • Patent number: 6943034
    Abstract: A method for producing arrays by spacing a dispenser a distance from a surface of a support, dispensing a volume containing a compound in a single coupling step of less than 5 nl to occupy a localized area of less than 1 cm2 of the surface of the support, allowing the compound to bind directly or indirectly to the support and repeating the steps to produce an array of at least 100 ligands at a density of 1000 per cm2 or greater.
    Type: Grant
    Filed: February 4, 2000
    Date of Patent: September 13, 2005
    Assignee: Affymetrix, Inc.
    Inventors: James L. Winkler, Stephen P. A. Fodor, Christopher J. Buchko, Debra A. Ross, Lois Aldwin, Douglas N. Modlin
  • Patent number: 6919009
    Abstract: A method is disclosed for the manufacture of colloidal rod particles as nanobarcodes. Template membranes for the deposition of materials are prepared using photolithographic techniques.
    Type: Grant
    Filed: October 2, 2001
    Date of Patent: July 19, 2005
    Assignee: Nanoplex Technologies, Inc.
    Inventors: Walter Stonas, Louis J. Dietz, Ian D. Walton, Michael J. Natan, James L. Winkler
  • Patent number: 6864101
    Abstract: A method for producing polymer arrays by spacing a dispenser a distance from a surface of a support, dispensing a volume containing a monomer in a single coupling step of less than 5 nl to occupy a localized area of less than 1 cm2 of the surface of the support, allowing the monomer to bind directly or indirectly to the support and repeating the steps to produce an array of at least 100 polymer ligands at a density of 1000 per cm2 or greater.
    Type: Grant
    Filed: May 26, 2000
    Date of Patent: March 8, 2005
    Assignee: Affymetrix, Inc.
    Inventors: James L. Winkler, Stephen P. A. Fodor, Christopher J. Buchko, Debra A. Ross, Lois Aldwin, Douglas N. Modlin
  • Patent number: 6849462
    Abstract: A method for producing arrays by depositing a resist on a substrate, selectively removing a portion of the resist to expose localized areas, dispensing a monomer to occupy a localized area of less than 1 cm2 of the surface of the support, allowing the monomer to bind directly or indirectly to the support and repeating the steps to produce an array of at least 10 different polymers is formed.
    Type: Grant
    Filed: May 26, 2000
    Date of Patent: February 1, 2005
    Assignee: Affymetrix, Inc.
    Inventors: James L. Winkler, Stephen P. A. Fodor, Christopher J. Buchko, Debra A. Ross, Lois Aldwin, Douglas N. Modlin
  • Publication number: 20040178076
    Abstract: A method is disclosed for the manufacture of colloidal rod particles as nanobarcodes. Template membranes for the deposition of materials are prepared using photolithographic techniques.
    Type: Application
    Filed: March 11, 2004
    Publication date: September 16, 2004
    Inventors: Walter J. Stonas, Louis J. Dietz, Ian D. Walton, Michael J. Natan, James L. Winkler
  • Publication number: 20040171054
    Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.
    Type: Application
    Filed: March 8, 2004
    Publication date: September 2, 2004
    Applicant: Affymetrix, INC.
    Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
  • Publication number: 20040166525
    Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.
    Type: Application
    Filed: February 27, 2004
    Publication date: August 26, 2004
    Applicant: Affymetrix, INC.
    Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
  • Patent number: 6780301
    Abstract: Synthetic methods for the manufacture of segmented nanoparticles are described.
    Type: Grant
    Filed: October 2, 2000
    Date of Patent: August 24, 2004
    Assignee: Surromed, Inc.
    Inventors: Michael J. Natan, Thomas E. Mallouk, Benjamin R. Martin, Brian D. Reiss, Louis J. Dietz, James L. Winkler
  • Publication number: 20040161143
    Abstract: The present invention provides an improved integrated system for biological marker identification. The system uses Microvolume Laser Scanning Microscopy (MLSC) in order to measure patterns of expression of biological markers in biological fluids. The system includes improved instrumentation for performing MLSC, and also includes improved particle detection and analysis methods. The system further comprises an informatics architecture for the analysis of data obtained from the MLSC in tandem with other medical information.
    Type: Application
    Filed: February 3, 2004
    Publication date: August 19, 2004
    Inventors: Louis J. Dietz, Ian Walton, Chih-Hua Chung, Scott Norton, James L. Winkler, Aaron B. Kantor, Byron Lee, Shalom Tsur
  • Publication number: 20040114456
    Abstract: The invention provides exemplary devices, systems and methods for mixing of fluids, such as biological fluids. One exemplary device comprises is particularly adapted for holding at least one cartridge having a chamber containing a biological fluid, with the chamber having a generally planar face. The device comprises a rotatable body having a rotational axis. The rotatable body includes at least one mounting element which is adapted to mount the rotatable body such that the face of the chamber is generally perpendicular to the rotational axis.
    Type: Application
    Filed: December 3, 2003
    Publication date: June 17, 2004
    Applicant: Affymetrix, Inc.
    Inventors: James L. Winkler, Mark Chee, David Lockhart
  • Publication number: 20040106130
    Abstract: A body 300 having a cavity 310 for mounting a substrate 120 fabricated with probe sequences at known locations according to the methods disclosed in U.S. Pat. No. 5,143,854 and PCT WO 92/10092 or others, is provided. The cavity includes inlets 350 and 360 for introducing selected fluids into the cavity to contact the probes. Accordingly, a commercially feasible device for use in high throughput assay systems is provided.
    Type: Application
    Filed: July 12, 2003
    Publication date: June 3, 2004
    Applicant: AFFYMETRIX, INC.
    Inventors: Donald M. Besemer, Virginia W. Goss, James L. Winkler
  • Publication number: 20040092032
    Abstract: A method and device for forming large arrays of polymers on a substrate (401). According to a preferred aspect of the invention, the substrate is contacted by a channel block (407) having channels (409) therein. Selected reagents are delivered through the channels, the substrate is rotated by a rotating stage (403), and the process is repeated to form arrays of polymers on the substrate. The method may be combined with light-directed methodolgies.
    Type: Application
    Filed: June 17, 2002
    Publication date: May 13, 2004
    Applicant: Affymetrix, Inc.
    Inventors: James L. Winkler, Stephen P.A. Fodor, Christopher J. Buchko, Debra A. Ross, Lois Aldwin, Douglas N. Modlin