Patents by Inventor James McDonnell

James McDonnell has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20250251403
    Abstract: The present disclosure relates generally to the field of immunology, and particularly relates to compositions, methods, and systems for the analysis and generation of antigen-binding molecules produced by immune cells obtained from tissue samples (e.g., antibodies produced by B cells in tumor tissue samples or TCRs produced by T cells in tumor tissue samples) using spatial methodologies, and for the production and characterization of recombinant antigen-binding molecules (e.g., antibodies, TCRs) with desired properties.
    Type: Application
    Filed: April 11, 2023
    Publication date: August 7, 2025
    Inventors: Wyatt James McDonnell, Michael John Terry Stubbington, Christina Galonska, Malte Kühnemund, Ariel Royall, Camilla Engblom, Kim A. Thrane, Jeffrey Eron Mold, Jonas Frisen, Joakim Lundeberg, Qirong Lin, Zachary W. Bent, Marlon Stoeckius, Caroline Julie Gallant, Katherine Pfeiffer
  • Publication number: 20250174298
    Abstract: Described herein are methods and related systems and computer program products for assessing the antigen binding specificity of an antigen binding molecule (ABM) expressed by one or more immune cells and may include contacting a plurality of cells comprising at least one antigen binding molecule with a first target antigen and a control; determining a first readout based on the binding of the at least one antigen binding molecule to the first target antigen; determining a second readout based on the binding of the at least one antigen binding molecule to the control; and determining, from the first readout and the second readout, a specificity metric representing the specificity of the at least one antigen binding molecule binding to the target antigen relative to the control.
    Type: Application
    Filed: December 3, 2024
    Publication date: May 29, 2025
    Inventors: Wyatt James McDonnell, David Benjamin Jaffe, Brett Olsen
  • Patent number: 12298314
    Abstract: The present disclosure relates in some aspects to methods and compositions for assessing the target binding capacity of a binding molecule, such as an antigen binding molecule, e.g., a monoclonal antibody. In some embodiments, provided herein is a method of analyzing binding of a barcode-labeled antibody to a target antigen expressed by a cell, wherein cells expressing the candidate antigens are partitioned and wherein detection of the barcoded nucleic acid molecule is indicative of the binding between the antibody or antigen-binding fragment thereof and the candidate antigen or epitope of the cell.
    Type: Grant
    Filed: October 8, 2021
    Date of Patent: May 13, 2025
    Assignee: 10x Genomics, Inc.
    Inventors: Wyatt James McDonnell, Michael John Terry Stubbington, Geoffrey McDermott
  • Publication number: 20250147038
    Abstract: The present disclosure relates generally to compositions, methods, and systems for the characterization of binding characteristics of antigen binding molecules, e.g., antibodies, using single-cell immune profiling methodologies. The compositions, methods and systems described herein permit rapid, high-throughput identification and characterization of antigen binding molecules having desired properties.
    Type: Application
    Filed: January 9, 2025
    Publication date: May 8, 2025
    Inventors: Michael John Terry Stubbington, Ravi Ramenani, Wyatt James McDonnell
  • Publication number: 20250123287
    Abstract: The present disclosure relates generally to compositions, methods, and systems for the characterization of antigen-binding molecules, e.g., multispecific T cell receptors, B cell receptors, antibodies, and antigen-binding fragments thereof, using single-cell immune profiling methodologies. The compositions, methods and systems described herein permit rapid, high-throughput identification and characterization of multispecific antigen binding molecules having desired properties.
    Type: Application
    Filed: December 19, 2024
    Publication date: April 17, 2025
    Inventor: Wyatt James McDonnell
  • Publication number: 20240102005
    Abstract: The present disclosure generally relates to methods and systems for engineering antibodies, and antigen-binding fragments thereof, to have altered characteristics. The present disclosure also provides a high-throughput method useful for identifying the engineered antibodies, or antigen-binding fragments thereof, that acquired the altered characteristics having performed the methods. These methods and systems have implications, for example, in the rapid development of biotherapeutics having desired and/or improved, e.g., affinity, specificity and/or activity-related, characteristics.
    Type: Application
    Filed: November 30, 2023
    Publication date: March 28, 2024
    Inventors: Michael John Terry Stubbington, Wyatt James McDonnell, Katherine Pfeiffer
  • Publication number: 20230368867
    Abstract: A method is provided for identifying one or more D gene segment in a VDJ or VDDJ sequence. The method can include obtaining a B cell receptor and/or T cell receptor data set, wherein the data set includes a VDJ sequence, aligning the VDJ sequence to one or more VDJ reference sequences thereby generating a first potential alignment and a second potential alignment, determining a first score for the first potential alignment and a second score for the second potential alignment in accordance with a D gene segment alignment scoring schema, and identifying a D gene segment region associated with a highest score between the first score and the second score.
    Type: Application
    Filed: May 1, 2023
    Publication date: November 16, 2023
    Inventors: David Benjamin Jaffe, Wyatt James McDonnell
  • Patent number: 11781967
    Abstract: A device and method are provided for determining whether a laminate is bonded or debonded from its substrate. The device and method provide simple, accurate, rapid, cost-effective, and reliable means for assessing the bonding state of a laminated substrate.
    Type: Grant
    Filed: December 31, 2019
    Date of Patent: October 10, 2023
    Assignee: The United States of America, as represented by the Secretary of the Navy
    Inventors: James McDonnell, Lisa Weiser, Jaime Santiago, Colin Ratcliffe
  • Publication number: 20210270806
    Abstract: Interactive visualization systems and methods are disclosed herein. The system includes a data source, user input device, processor, and display. The data source obtains a data set comprising B cell receptor and/or T cell receptor data associated with a plurality of cells. The user input device receives a user-selected first parameter under which to analyze the data set. The processor performs the method by identifying a plurality of clonotype groups in the data set using the first parameter, identifying subclonotypes within the clonotype groups (wherein each identified subclonotype comprises cells having identical V(D)J transcripts), and processing the data to define a visualization model that can display a compressed view of the clonotype groups and of the plurality of subclonotypes. The display renders a visualization of said data set according to said visualization model.
    Type: Application
    Filed: February 22, 2021
    Publication date: September 2, 2021
    Inventors: Wyatt James McDonnell, David Benjamin Jaffe
  • Patent number: 10148731
    Abstract: The disclosed subject matter describes herein a method for on-boarding virtualized network function (VNF) packages in a network functions virtualization (NFV) system that includes receiving a VNF package archive (VPAR) file containing a VNF package and accessing a VNF descriptor (VNFD) file in a VNFD directory contained within the VPAR file. The method further includes uploading the VNFD file from the VNFD directory to a VNF catalog in the NFV system and deploying, in a virtual environment associated with the NFV system, one or more VNFs in accordance to the contents of the uploaded VNFD file and an associated VNF image file.
    Type: Grant
    Filed: June 30, 2015
    Date of Patent: December 4, 2018
    Assignee: ORACLE INTERNATIONAL CORPORATION
    Inventor: Kevin James McDonnell
  • Publication number: 20170006083
    Abstract: According to one example, the disclosed subject matter describes herein a method for on-boarding VNF packages in a network functions virtualization (NFV) system that includes receiving a virtualized network function (VNF) package archive (VPAR) file containing a VNF package and accessing a VNFD file in a VNFD directory contained within the VPAR file.
    Type: Application
    Filed: June 30, 2015
    Publication date: January 5, 2017
    Inventor: Kevin James McDonnell
  • Patent number: 9106516
    Abstract: In one embodiment, a central service request management system for managing service requests across a plurality of ticketing systems. The central service request management system includes translation logic for receiving service request messages from the plurality of ticketing systems and translating the service request messages to a standardized format, where each service request message is associated with a respective service request. Additionally, the central service request management system includes data storage logic for maintaining a status of service requests based on the translated service request messages. The central service request management system further includes routing logic for identifying one of the plurality of ticketing systems to transmit each translated service request message to based on the maintained status of the service request associated with the service request message, and for transmitting the translated service request message to the identified ticketing system.
    Type: Grant
    Filed: April 4, 2012
    Date of Patent: August 11, 2015
    Assignee: Cisco Technology, Inc.
    Inventors: Frank L. O. Palmans, Ammar Rayes, James McDonnell, Vikrant Dev Andotra
  • Publication number: 20140158733
    Abstract: The present disclosure provides a concealed-carry firearm holster for wearing under the clothes of a user between the user's waist and a waistband of the user's pants. The holster generally includes a backing panel and a firearm receptacle connected to the backing panel and structured and operable to removably retain a firearm. The holster additionally includes pair of belt clips removably connected, via removable fasteners, to the backing panel and structured and operable to removably secure the holster to at least one of the waistband and belt threaded through belt loops of the user's pants to retain the holster in position under the user's clothes. Furthermore, the holster includes a pair of belt clip covers disposable over the belt clips, wherein the clip covers are structured and operable to resemble the belt loops of the user's pants.
    Type: Application
    Filed: December 10, 2012
    Publication date: June 12, 2014
    Inventor: James McDonnell
  • Publication number: 20140158730
    Abstract: A firearm holster for storing a firearm within a vehicle such that the firearm is secure and easily accessible. The holster includes a backing panel and a firearm housing connected to the backing panel and structured and operable to provide a firearm receptacle to removably retain a firearm. The holster additionally includes a support panel connectable to the backing panel. The support panel structured and operable to be positioned and secured, along with the backing panel and firearm receptacle, between two closely adjacent structures of the vehicle and to contact a floor of the vehicle along a bottom edge such that the firearm receptacle is positionable at a desired height above the floor between the closely adjacent structures. The holster further includes a cinching strap connected to the backing panel. The cinching strap structured and operable to secure the holster to an anchor point within the vehicle.
    Type: Application
    Filed: December 10, 2012
    Publication date: June 12, 2014
    Inventor: James McDonnell
  • Patent number: 8589544
    Abstract: A method is provided in one example and includes verifying a storage capacity of a network element coupled to an end device over a network connection. The method also includes executing script provided in the network element, which is configured for exchanging packets in a network environment. The script initiates a collection of data being retrieved from the end device. The data can be Fault, Configuration, Accounting, Performance, and Security (FCAPS) data associated with the end device. The data collected from the end device is communicated to a next destination.
    Type: Grant
    Filed: November 7, 2012
    Date of Patent: November 19, 2013
    Assignee: Cisco Technology, Inc.
    Inventors: Pradeep K. Banerjee, Shyyunn Sheran Lin, Ammar Rayes, Gregory S. Thompson, Subrata Dasgupta, Virendra K. Malaviya, James McDonnell
  • Publication number: 20130067078
    Abstract: A method is provided in one example and includes verifying a storage capacity of a network element coupled to an end device over a network connection. The method also includes executing script provided in the network element, which is configured for exchanging packets in a network environment. The script initiates a collection of data being retrieved from the end device. The data can be Fault, Configuration, Accounting, Performance, and Security (FCAPS) data associated with the end device. The data collected from the end device is communicated to a next destination.
    Type: Application
    Filed: November 7, 2012
    Publication date: March 14, 2013
    Inventors: Pradeep K. Banerjee, Shyyunn Sheran Lin, Ammar Rayes, Gregory S. Thompson, Subrata Dasgupta, Virendra K. Malaviya, James McDonnell
  • Patent number: 8332511
    Abstract: A method is provided in one example and includes verifying a storage capacity of a network element coupled to an end device over a network connection. The method also includes executing script provided in the network element, which is configured for exchanging packets in a network environment. The script initiates a collection of data being retrieved from the end device. The data can be Fault, Configuration, Accounting, Performance, and Security (FCAPS) data associated with the end device. The data collected from the end device is communicated to a next destination.
    Type: Grant
    Filed: July 31, 2010
    Date of Patent: December 11, 2012
    Assignee: Cisco Technology, Inc.
    Inventors: Pradeep K. Banerjee, Shyyunn Sheran Lin, Ammar Rayes, Gregory S. Thompson, Subrata Dasgupta, Virendra K. Malaviya, James McDonnell
  • Publication number: 20100223382
    Abstract: A system, method and application for facilitating network support for an install-base network is provided. The method includes performing, at an access node of the install-base network, network discovery to discover one or more nodes of the install-base network. The method also includes collecting, at the nodes, their respective inventories (“network-node inventories”). The method further includes collecting the network-node inventories at the access node, and sending the network-node inventories from the access node to a back-office system external to the install-base network. The method may, optionally, include the access node aggregating the network-node inventories to form aggregate information, and sending the aggregate information to the back-office system in addition to or in lieu of the of network-node inventories.
    Type: Application
    Filed: February 27, 2009
    Publication date: September 2, 2010
    Applicant: Cisco Technology
    Inventors: Ammar Rayes, Michael Cheung, James McDonnell
  • Publication number: 20070095928
    Abstract: A physical object comprises one or more memory circuits adapted to be read wirelessly by a reader device attached to or incorporated within the physical object. Data in the memory circuit is protected from access by an unauthorised reader. Data in the memory circuit is also adapted to identify an authorised bearer of the physical object. Moreover, data in the memory circuit is adapted to allow access to a specified asset or assets by the authorised bearer.
    Type: Application
    Filed: July 26, 2006
    Publication date: May 3, 2007
    Inventors: Helen Balinsky, Weng Loh, Fraser Dickin, Thomas Rathbone, Stefek Zaba, Keith Harrison, John Waters, James McDonnell
  • Publication number: 20070090186
    Abstract: Apparatus for providing electronic data associated with an item to a user, the apparatus comprising a memory tag scanner arranged to communicate with a memory tag associated with an item, a user profile memory arranged to store user profile data therein, an output interface arranged to provide data to a user, and a data processor arranged to cause data to be read from the memory tag associated with an item and the data to be selectively provided to a user via the output interface in accordance with the stored user profile data.
    Type: Application
    Filed: July 26, 2006
    Publication date: April 26, 2007
    Inventors: Richard Lawrence, James McDonnell, Maurizio Pilu