Patents by Inventor James P. O'Connell

James P. O'Connell has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240125719
    Abstract: A defined peak region residing between about 3.2 and 3.4 ppm of a proton NMR spectrum of an in vitro biosample is electronically evaluated to determine a level of trimethylamine-N-oxide (“TMAO”). The biosample may be any suitable biosamples including human serum with a normal biologic range of between about 1-50 ?M or urine with a normal biologic range of between about 0-1000 ?M.
    Type: Application
    Filed: September 21, 2023
    Publication date: April 18, 2024
    Applicant: Liposcience, Inc.
    Inventors: James D. Otvos, Elias J. Jeyarajah, Justyna E. Wolak-Dinsmore, Thomas M. O'Connell, Dennis W. Bennett, Steven P. Matyus, Stanley L. Hazen
  • Patent number: 7857957
    Abstract: We have performed separation of bacterial and cancer cells from peripheral human blood in microfabricated electronic chips by dielectrophoresis. The isolated cells were examined by staining the nuclei with fluorescent dye followed by laser induced fluorescence imaging. We have also released DNA and RNA from the isolated cells electronically and detected specific marker sequences by DNA amplification followed by electronic hybridization to immobilized capture probes. Efforts towards the construction of a “laboratory-on-a-chip” system are presented which involves the selection of DNA probes, dyes, reagents and prototyping of the fully integrated portable instrument.
    Type: Grant
    Filed: February 5, 2007
    Date of Patent: December 28, 2010
    Assignee: Gamida for Life B.V.
    Inventors: Jing Cheng, Lei Wu, Michael J. Heller, Edward L. Sheldon, Jonathan M. Diver, James P. O'Connell, Dan Smolko, Shila Jalali, David Willoughby
  • Publication number: 20100108577
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers. In one aspect, a particle may be characterized by determining its optophoretic constant or signature. For example, a diseased cell has a different optophoretic constant from a healthy cell, thereby providing information, or the basis for sorting. In the event of physical sorting, various forces may be used for separation, including fluidic forces, such as through the use of laminar flow, or optical forces, or mechanical forces, such as through adhesion.
    Type: Application
    Filed: August 21, 2009
    Publication date: May 6, 2010
    Inventors: Mark M. Wang, Eugene Tu, Luis M. Pestana, Andrew E. Senyei, James P. O'Connell, Tina S. Nova, Kristie L. Lykstad, Jeffrey M. Hall, William F. Butler
  • Patent number: 7582421
    Abstract: This application includes methods for detecting single nucleotide polymorphisms (SNPs) in a sample using an electronically addressable microchip having a plurality of test sites. A sample nucleic acid is electronically biased, concentrated at, and immobilized to a test site on the microchip. A mixture comprising a first labeled probe and a second labeled probe is electronically hybridized to the sample nucleic acid to form first or second hybridized complexes. The first labeled probe is perfectly complementary to the first sample nucleic acid and the second labeled probe is complementary to the sample nucleic acid and contains a nucleotide that forms a mismatch with the nucleotide at the site of the polymorphism. The first or second hybridized complexes are detected by determining a signal intensity of the label of the first or second probe.
    Type: Grant
    Filed: September 16, 2002
    Date of Patent: September 1, 2009
    Assignee: Nanogen, Inc.
    Inventors: Ronald G. Sosnowski, Michael I. Nerenberg, David M. Canter, Ray R. Radtkey, Ling Wang, James P. O'Connell
  • Patent number: 7315784
    Abstract: In a method and a network for evaluating medical data in a clinical study, biochips containing patient samples with multiple biomolecular markers are tested in a number of point of care test devices respectively at point of care sites. Each test of each biochip sample produces a diagnostic result, which is entered into the electronic patient record for the patient who produced the sample. A follow-up examination is subsequently conducted for each patient, and the results of the follow-up examination are also entered into that patient's electronic patient record. The follow-up results indicate whether the diagnostic test result was a false positive, a false negative or correct. The follow-up data and the original diagnostic results from all point of care sites are electronically transmitted to a remote server, which has access to an expert system which uses the test results and the follow-up data to automatically devise a measurement protocol for a selected pathology.
    Type: Grant
    Filed: February 15, 2001
    Date of Patent: January 1, 2008
    Assignees: Siemens Aktiengesellschaft, Nanogen, Inc.
    Inventors: Klaus Abraham-Fuchs, Arne Hengerer, Norbert Windhab, Kieran T. Gallahue, James P. O'Connell, Greg Gosch
  • Patent number: 7172896
    Abstract: We have performed separation of bacterial and cancer cells from peripheral human blood in microfabricated electronic chips by dielectrophoresis. The isolated cells were examined by staining the nuclei with fluorescent dye followed by laser induced fluorescence imaging. We have also released DNA and RNA from the isolated cells electronically and detected specific marker sequences by DNA amplification followed by electronic hybridization to immobilized capture probes. Efforts towards the construction of a “laboratory-on-a-chip” system are presented which involves the selection of DNA probes, dyes, reagents and prototyping of the fully integrated portable instrument.
    Type: Grant
    Filed: June 5, 2002
    Date of Patent: February 6, 2007
    Assignee: Nanogen, Inc.
    Inventors: Jing Cheng, Lei Wu, Michael J. Heller, Ed Sheldon, Jonathan Diver, James P. O'Connell, Dan Smolko, Shila Jalali, David Willoughby
  • Patent number: 6989086
    Abstract: The present invention comprises devices and methods for performing channel-less separation of cell particles by dielectrophoresis, DC high voltage-pulsed electronic lysis of separated cells, separation of desired components from crude mixtures such as cell lysates, and/or enzymatic reaction of such lysates, all of which can be conducted on a single bioelectronic chip. A preferred embodiment of the present invention comprises a cartridge (10) including a microfabricated silicon chip (12) on a printed circuit board (14) and a flow cell (16) mounted to the chip (12) to form a flow chamber. The cartridge (10) also includes output pins (22) for electronically connecting the cartridge (10) to an electronic controller. The chip (12) % includes a plurality of circular microelectrodes (24) which are preferably coated with a protective permeation layer. Specific cells from various cell mixtures were separated, lysed, and enzymatically digested on the chip.
    Type: Grant
    Filed: July 13, 2001
    Date of Patent: January 24, 2006
    Assignee: Nanogen, Inc.
    Inventors: Jing Cheng, Edward L. Sheldon, III, Lei Wu, James P. O'Connell
  • Patent number: 6833542
    Abstract: A method for sorting a particle of interest from a plurality of particles includes the steps of determining an absorption maxima of the particle of interest, providing a light source for generating a beam of coherent light at a wavelength correlating to the absorption maxima, providing a plurality of particles on a support surface, and imparting relative motion between the beam of coherent light and the plurality of particles so as to cause differential movement between the particle of interest and the plurality of particles. The particle of interest is then collected.
    Type: Grant
    Filed: November 14, 2001
    Date of Patent: December 21, 2004
    Assignee: Genoptix, Inc.
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler
  • Patent number: 6815664
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers.
    Type: Grant
    Filed: November 14, 2001
    Date of Patent: November 9, 2004
    Assignee: Genoptix, Inc.
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler
  • Patent number: 6784420
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers. In one aspect, a method is provided for interacting an optical gradient field in three dimensions with a particle by interfering two beams to generate a plurality of planar fronts, providing a plurality of particles in a medium, and moving the planar fronts relative to the particles, whereby the particles are separated at least in part based upon the dielectric constant of the particles.
    Type: Grant
    Filed: November 14, 2001
    Date of Patent: August 31, 2004
    Assignee: Genoptix, Inc.
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler
  • Patent number: 6744038
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers. The invention includes methods for separating particles in a medium where the particles having differing dielectric constants by providing a medium having a dielectric constant between the dielectric constants of the particles, subjecting the particles in the media to an optical gradient field, and separating the particles.
    Type: Grant
    Filed: November 14, 2001
    Date of Patent: June 1, 2004
    Assignee: Genoptix, Inc.
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler
  • Publication number: 20040086917
    Abstract: Methods for electronic perturbation of fluorescence, chemilluminescence and other emissive materials provide for molecular biological analysis.
    Type: Application
    Filed: July 18, 2003
    Publication date: May 6, 2004
    Applicant: Nanogen, Inc.
    Inventors: Michael J. Heller, Eugene Tu, Ronald G. Sosnowski, James P. O'Connell
  • Publication number: 20030073122
    Abstract: Methods are provided for the analysis and determination of the nature of single nucleic acid polymorphisms (SNPs) in a genetic target. In one method of this invention, the nature of the SNPs in the genetic target is determined by the steps of providing a plurality of hybridization complexes arrayed on a plurality of test sites on an electronically bioactive microchip, where the hybridization complex includes at least a nucleic acid target containing a SNP, a stabilizer probe having a sequence complementary to the target sequence and/or reporter probe, and a reporter probe having a selected sequence complementary to either the stabilizer or the same target sequence strand wherein a selected sequence of the reporter includes either a wild type nucleotide or a nucleotide corresponding to the SNP of the target.
    Type: Application
    Filed: September 16, 2002
    Publication date: April 17, 2003
    Applicant: Nanogen, Inc.
    Inventors: Ronald G. Sosnowski, Michael I. Nerenberg, David M. Canter, Ray R. Radtkey, Ling Wang, James P. O'Connell
  • Publication number: 20030007894
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers. In one aspect, a particle may be characterized by determining its optophoretic constant or signature. For example, a diseased cell has a different optophoretic constant from a healthy cell, thereby providing information, or the basis for sorting. In the event of physical sorting, various forces may be used for separation, including fluidic forces, such as through the use of laminar flow, or optical forces, or mechanical forces, such as through adhesion.
    Type: Application
    Filed: April 27, 2001
    Publication date: January 9, 2003
    Applicant: GENOPTIX
    Inventors: Mark M. Wang, Eugene Tu, Luis M. Pestana, Andrew E. Senyei, James P. O'Connell, Tina S. Nova, Kristie L. Lykstad, Jeffrey M. Hall, William F. Butler
  • Publication number: 20030008364
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers.
    Type: Application
    Filed: November 14, 2001
    Publication date: January 9, 2003
    Applicant: Genoptix
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler
  • Publication number: 20020155586
    Abstract: We have performed separation of bacterial and cancer cells from peripheral human blood in microfabricated electronic chips by dielectrophoresis. The isolated cells were examined by staining the nuclei with fluorescent dye followed by laser induced fluorescence imaging. We have also released DNA and RNA from the isolated cells electronically and detected specific marker sequences by DNA amplification followed by electronic hybridization to immobilized capture probes. Efforts towards the construction of a “laboratory-on-a-chip” system are presented which involves the selection of DNA probes, dyes, reagents and prototyping of the fully integrated portable instrument.
    Type: Application
    Filed: June 5, 2002
    Publication date: October 24, 2002
    Applicant: Nanogen, Inc.
    Inventors: Jing Cheng, Lei Wu, Michael J. Heller, Edward L. Sheldon, Jonathan M. Diver, James P. O'Connell, Dan Smolko, Shila Jalali, David Willoughby
  • Patent number: 6468742
    Abstract: Methods are provided for the analysis and determination of the nature of single nucleic acid polymorphisms (SNPs) in a genetic target. In one method of this invention, the nature of the SNPs in the genetic target is determined by the steps of providing a plurality of hybridization complexes arrayed on a plurality of test sites on an electronically bioactive microchip, where the hybridization complex includes at least a nucleic acid target containing a SNP, a stabilizer probe having a sequence complementary to the target sequence and/or reporter probe, and a reporter probe having a selected sequence complementary to either the stabilizer or the same target sequence strand wherein a selected sequence of the reporter includes either a wild type nucleotide or a nucleotide corresponding to the SNP of the target.
    Type: Grant
    Filed: April 12, 1999
    Date of Patent: October 22, 2002
    Assignee: Nanogen, Inc.
    Inventors: Michael I. Nerenberg, David M. Canter, Ray R. Radtkey, Ling Wang, James P. O'connell, Ronald G. Sosnowski
  • Publication number: 20020132316
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers. In one aspect, a method is provided for analysis or separation of a plurality of particles by selecting a wavelength for illumination based upon an analysis of absorption spectra, illuminating the particles with the selected wavelength, considering response of particles to multiple wavelengths, selecting wavelengths based on one or more desired parameters, and illuminating the population to obtain optimized differential motion.
    Type: Application
    Filed: November 14, 2001
    Publication date: September 19, 2002
    Applicant: Genoptix
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler
  • Publication number: 20020132315
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers. The invention includes methods for separating particles in a medium where the particles having differing dielectric constants by providing a medium having a dielectric constant between the dielectric constants of the particles, subjecting the particles in the media to an optical gradient field, and separating the particles.
    Type: Application
    Filed: November 14, 2001
    Publication date: September 19, 2002
    Applicant: Genoptix
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler
  • Publication number: 20020123112
    Abstract: Apparatus and methods are provided for interacting light with particles, including but not limited to biological matter such as cells, in unique and highly useful ways. Optophoresis consists of subjecting particles to various optical forces, especially optical gradient forces, and more particularly moving optical gradient forces, so as to obtain useful results. In biology, this technology represents a practical approach to probing the inner workings of a living cell, preferably without any dyes, labels or other markers. In one aspect, a method is provided for separating particles having different dielectric constants by separating the particles in a medium having a dielectric constant chosen to enhance the sensitivity of the discrimination between the particles, and changing the medium to one having a dielectric constant which causes faster separation between the particles.
    Type: Application
    Filed: November 14, 2001
    Publication date: September 5, 2002
    Applicant: Genoptix
    Inventors: Mark M. Wang, Eugene Tu, James P. O'Connell, Kristie L. Lykstad, William F. Butler