Patents by Inventor James R. Scherer

James R. Scherer has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 7090758
    Abstract: An improved rotary confocal fluorescence scanner capable of detecting analytes separated on over a 1,000 capillaries simultaneously. This system uses a confocal microscope objective and mirror assembly that rotates inside a vertical ring of capillaries to provide rapid and efficient excitation and detection of fluorescently labeled fragments separated within a cylindrical capillary array. Use of automated procedures to load and run all capillaries permits one to read more than 350,000 base pairs of raw sequence data per hour.
    Type: Grant
    Filed: October 31, 2002
    Date of Patent: August 15, 2006
    Assignee: Affymetrix, Inc.
    Inventors: Richard A. Mathies, James R. Scherer
  • Patent number: 6867420
    Abstract: A miniaturized optical excitation and detector system is described for detecting fluorescently labeled analytes in electrophoretic microchips and microarrays. The system uses miniature integrated components, light collection, optical fluorescence filtering, and an amorphous a-Si:H detector for detection. The collection of light is accomplished with proximity gathering and/or a micro-lens system. Optical filtering is accomplished by integrated optical filters. Detection is accomplished utilizing a-Si:H detectors.
    Type: Grant
    Filed: October 10, 2002
    Date of Patent: March 15, 2005
    Assignee: The Regents of the University of California
    Inventors: Richard A. Mathies, Toshihiro Kamei, James R. Scherer, Robert A. Street
  • Publication number: 20030222223
    Abstract: A miniaturized optical excitation and detector system is described for detecting fluorescently labeled analytes in electrophoretic microchips and microarrays. The system uses miniature integrated components, light collection, optical fluorescence filtering, and an amorphous a-Si:H detector for detection. The collection of light is accomplished with proximity gathering and/or a micro-lens system. Optical filtering is accomplished by integrated optical filters. Detection is accomplished utilizing a-Si:H detectors.
    Type: Application
    Filed: October 10, 2002
    Publication date: December 4, 2003
    Inventors: Toshihiro Kamei, Richard A. Mathies, James R. Scherer, Robert A. Street
  • Publication number: 20030150727
    Abstract: An improved rotary confocal fluorescence scanner capable of detecting analytes separated on over a 1,000 capillaries simultaneously. This system uses a confocal microscope objective and mirror assembly that rotates inside a vertical ring of capillaries to provide rapid and efficient excitation and detection of fluorescently labeled fragments separated within a cylindrical capillary array. Use of automated procedures to load and run all capillaries permits one to read more than 350,000 base pairs of raw sequence data per hour.
    Type: Application
    Filed: October 31, 2002
    Publication date: August 14, 2003
    Applicant: Affymetrix, Inc.
    Inventors: Richard A. Mathies, James R. Scherer
  • Patent number: 6554986
    Abstract: An improved rotary confocal fluorescence scanner capable of detecting analytes separated on over a 1,000 capillaries simultaneously. This system uses a confocal microscope objective and mirror assembly that rotates inside a vertical ring of capillaries to provide rapid and efficient excitation and detection of fluorescently labeled fragments separated within a cylindrical capillary array. Use of automated procedures to load and run all capillaries permits one to read more than 350,000 base pairs of raw sequence data per hour.
    Type: Grant
    Filed: May 25, 2000
    Date of Patent: April 29, 2003
    Assignee: Affymetrix, Inc.
    Inventors: Richard A. Mathies, James R. Scherer
  • Patent number: 6270644
    Abstract: A Monster Capillary Array Electrophoresis scanner measures four-color electropherograms from over a thousand capillary electrophoretic separations in parallel. The system consists of a two-dimensional confocal rotary scanner and a four-color detection unit.
    Type: Grant
    Filed: January 27, 1999
    Date of Patent: August 7, 2001
    Assignee: Affymetrix, Inc.
    Inventors: Richard A. Mathies, James R. Scherer
  • Patent number: 6100535
    Abstract: A confocal scanner which scans a circular path traversing capillaries in a planar array for detecting separations performed in said capillaries.
    Type: Grant
    Filed: January 29, 1998
    Date of Patent: August 8, 2000
    Assignee: The Regents of the University of California
    Inventors: Richard A. Mathies, James R. Scherer, David Wexler
  • Patent number: 4239390
    Abstract: High resolution scattering spectra are obtained from irradiation of a sample with monochromatic light without disturbing the position of the sample, the spectra being characterized by freedom from artifacts due to the presence of optical components which distort the intensities of the scattered spectra. Scattered light from an irradiated sample and light from a white light source of constant or known emissivity are passed through the optical components and dispersed and measured with a monochromator and detector. The so-measured light intensities of the scattered light from the irradiated sample and the light from the white light source are ratioed at each wavelength to yield a light intensity representative solely of the scattered light from the irradiated sample, which is then displayed as a function of wavelength.
    Type: Grant
    Filed: May 4, 1979
    Date of Patent: December 16, 1980
    Assignee: The United States of America as represented by the Secretary of Agriculture
    Inventor: James R. Scherer